Strain Fitness in Agrobacterium fabrum C58 around Atu5004

Experiment: Hydantoin (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5003 and Atu5004 are separated by 44 nucleotidesAtu5004 and Atu5005 are separated by 19 nucleotides Atu5003: Atu5003 - fructosyl amino acid oxidase, at 4,153 to 5,280 Atu5003 Atu5004: Atu5004 - deoxyfructose oxidoreductase, at 5,325 to 6,332 Atu5004 Atu5005: Atu5005 - deoxyfructosyl-amino acid ABC-type membrane transporter, at 6,352 to 7,860 Atu5005 Position (kb) 5 6 7Strain fitness (log2 ratio) -1 0 1 2 3 4at 4.336 kb on - strand, within Atu5003at 4.363 kb on - strand, within Atu5003at 4.422 kb on + strand, within Atu5003at 4.463 kb on + strand, within Atu5003at 4.471 kb on - strand, within Atu5003at 4.471 kb on - strand, within Atu5003at 4.471 kb on - strand, within Atu5003at 4.541 kb on + strand, within Atu5003at 4.543 kb on + strand, within Atu5003at 4.549 kb on - strand, within Atu5003at 4.549 kb on - strand, within Atu5003at 4.549 kb on - strand, within Atu5003at 4.551 kb on - strand, within Atu5003at 4.579 kb on + strand, within Atu5003at 4.671 kb on + strand, within Atu5003at 4.671 kb on + strand, within Atu5003at 4.690 kb on + strand, within Atu5003at 4.691 kb on + strand, within Atu5003at 4.691 kb on + strand, within Atu5003at 4.723 kb on - strand, within Atu5003at 4.730 kb on + strand, within Atu5003at 4.738 kb on - strand, within Atu5003at 4.738 kb on - strand, within Atu5003at 4.761 kb on - strand, within Atu5003at 4.818 kb on - strand, within Atu5003at 4.836 kb on - strand, within Atu5003at 4.844 kb on + strand, within Atu5003at 4.844 kb on + strand, within Atu5003at 4.852 kb on - strand, within Atu5003at 4.853 kb on - strand, within Atu5003at 5.002 kb on + strand, within Atu5003at 5.093 kb on + strand, within Atu5003at 5.143 kb on + strand, within Atu5003at 5.185 kb on + strandat 5.323 kb on + strandat 5.330 kb on + strandat 5.377 kb on + strandat 5.421 kb on - strandat 5.432 kb on + strand, within Atu5004at 5.573 kb on - strand, within Atu5004at 5.598 kb on - strand, within Atu5004at 5.646 kb on + strand, within Atu5004at 5.654 kb on - strand, within Atu5004at 5.726 kb on + strand, within Atu5004at 5.730 kb on - strand, within Atu5004at 5.776 kb on + strand, within Atu5004at 5.850 kb on - strand, within Atu5004at 5.884 kb on + strand, within Atu5004at 5.894 kb on + strand, within Atu5004at 5.962 kb on - strand, within Atu5004at 6.055 kb on + strand, within Atu5004at 6.055 kb on + strand, within Atu5004at 6.073 kb on + strand, within Atu5004at 6.073 kb on - strand, within Atu5004at 6.112 kb on + strand, within Atu5004at 6.112 kb on + strand, within Atu5004at 6.112 kb on + strand, within Atu5004at 6.171 kb on - strand, within Atu5004at 6.172 kb on - strand, within Atu5004at 6.252 kb on + strandat 6.355 kb on + strandat 6.363 kb on - strandat 6.447 kb on - strandat 6.554 kb on + strand, within Atu5005at 6.562 kb on - strand, within Atu5005at 6.562 kb on - strand, within Atu5005at 6.562 kb on - strand, within Atu5005at 6.581 kb on + strand, within Atu5005at 6.589 kb on - strand, within Atu5005at 6.608 kb on - strand, within Atu5005at 6.620 kb on - strand, within Atu5005at 6.745 kb on - strand, within Atu5005at 6.755 kb on + strand, within Atu5005at 7.013 kb on + strand, within Atu5005at 7.013 kb on - strand, within Atu5005at 7.021 kb on - strand, within Atu5005at 7.041 kb on - strand, within Atu5005at 7.146 kb on - strand, within Atu5005at 7.196 kb on + strand, within Atu5005at 7.209 kb on - strand, within Atu5005at 7.217 kb on - strand, within Atu5005at 7.279 kb on + strand, within Atu5005at 7.279 kb on + strand, within Atu5005at 7.279 kb on + strand, within Atu5005at 7.287 kb on - strand, within Atu5005at 7.287 kb on - strand, within Atu5005at 7.287 kb on - strand, within Atu5005at 7.287 kb on - strand, within Atu5005at 7.320 kb on - strand, within Atu5005

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hydantoin (N)
remove
4,336 - Atu5003 0.16 +0.5
4,363 - Atu5003 0.19 +0.6
4,422 + Atu5003 0.24 -0.6
4,463 + Atu5003 0.27 +4.3
4,471 - Atu5003 0.28 +1.7
4,471 - Atu5003 0.28 -1.2
4,471 - Atu5003 0.28 -0.4
4,541 + Atu5003 0.34 +0.0
4,543 + Atu5003 0.35 +0.8
4,549 - Atu5003 0.35 -0.2
4,549 - Atu5003 0.35 -0.7
4,549 - Atu5003 0.35 +0.3
4,551 - Atu5003 0.35 -0.5
4,579 + Atu5003 0.38 -0.0
4,671 + Atu5003 0.46 +0.3
4,671 + Atu5003 0.46 +1.4
4,690 + Atu5003 0.48 +1.5
4,691 + Atu5003 0.48 -0.2
4,691 + Atu5003 0.48 +0.5
4,723 - Atu5003 0.51 +0.3
4,730 + Atu5003 0.51 -0.2
4,738 - Atu5003 0.52 +2.3
4,738 - Atu5003 0.52 +0.7
4,761 - Atu5003 0.54 -0.1
4,818 - Atu5003 0.59 +1.7
4,836 - Atu5003 0.61 -0.1
4,844 + Atu5003 0.61 +1.1
4,844 + Atu5003 0.61 -0.3
4,852 - Atu5003 0.62 -0.1
4,853 - Atu5003 0.62 +0.8
5,002 + Atu5003 0.75 -0.6
5,093 + Atu5003 0.83 +0.7
5,143 + Atu5003 0.88 +0.1
5,185 + +1.1
5,323 + -0.4
5,330 + +0.5
5,377 + -1.2
5,421 - -1.1
5,432 + Atu5004 0.11 +1.1
5,573 - Atu5004 0.25 -0.0
5,598 - Atu5004 0.27 +2.3
5,646 + Atu5004 0.32 -0.8
5,654 - Atu5004 0.33 +0.3
5,726 + Atu5004 0.40 +1.1
5,730 - Atu5004 0.40 +3.3
5,776 + Atu5004 0.45 -0.2
5,850 - Atu5004 0.52 +0.9
5,884 + Atu5004 0.55 +1.0
5,894 + Atu5004 0.56 +1.0
5,962 - Atu5004 0.63 +0.6
6,055 + Atu5004 0.72 -0.2
6,055 + Atu5004 0.72 +0.9
6,073 + Atu5004 0.74 +0.2
6,073 - Atu5004 0.74 +0.3
6,112 + Atu5004 0.78 +2.3
6,112 + Atu5004 0.78 -0.1
6,112 + Atu5004 0.78 +0.7
6,171 - Atu5004 0.84 +1.2
6,172 - Atu5004 0.84 +0.4
6,252 + +0.2
6,355 + -0.1
6,363 - +1.6
6,447 - -1.3
6,554 + Atu5005 0.13 +1.6
6,562 - Atu5005 0.14 +0.2
6,562 - Atu5005 0.14 +2.2
6,562 - Atu5005 0.14 +0.3
6,581 + Atu5005 0.15 -0.2
6,589 - Atu5005 0.16 +0.7
6,608 - Atu5005 0.17 +2.2
6,620 - Atu5005 0.18 +1.0
6,745 - Atu5005 0.26 +2.0
6,755 + Atu5005 0.27 -0.8
7,013 + Atu5005 0.44 -0.0
7,013 - Atu5005 0.44 -0.0
7,021 - Atu5005 0.44 +0.3
7,041 - Atu5005 0.46 +0.7
7,146 - Atu5005 0.53 +1.7
7,196 + Atu5005 0.56 +0.2
7,209 - Atu5005 0.57 +0.7
7,217 - Atu5005 0.57 +0.6
7,279 + Atu5005 0.61 +0.4
7,279 + Atu5005 0.61 +1.0
7,279 + Atu5005 0.61 +0.5
7,287 - Atu5005 0.62 -0.6
7,287 - Atu5005 0.62 +2.0
7,287 - Atu5005 0.62 +0.0
7,287 - Atu5005 0.62 +0.1
7,320 - Atu5005 0.64 +1.1

Or see this region's nucleotide sequence