Experiment: Hydantoin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3597 and Atu3598 are separated by 46 nucleotides Atu3598 and Atu3599 are separated by 22 nucleotides Atu3599 and Atu3600 overlap by 14 nucleotides Atu3600 and Atu3601 are separated by 13 nucleotides
Atu3597: Atu3597 - 3-hydroxybutyryl-CoA dehydrogenase, at 651,491 to 652,372
Atu3597
Atu3598: Atu3598 - thiol:disulfide interchange protein, at 652,419 to 653,087
Atu3598
Atu3599: Atu3599 - argininosuccinate lyase, at 653,110 to 654,510
Atu3599
Atu3600: Atu3600 - hypothetical protein, at 654,497 to 654,808
Atu3600
Atu3601: Atu3601 - diaminopimelate decarboxylase, at 654,822 to 656,090
Atu3601
Position (kb) 653
654
655 Strain fitness (log2 ratio) -1
0
1 at 652.116 kb on - strand, within Atu3597 at 652.116 kb on - strand, within Atu3597 at 652.272 kb on + strand, within Atu3597 at 652.272 kb on + strand, within Atu3597 at 652.439 kb on + strand at 652.472 kb on - strand at 652.472 kb on - strand at 652.525 kb on - strand, within Atu3598 at 652.811 kb on - strand, within Atu3598 at 652.954 kb on - strand, within Atu3598
Per-strain Table
Position Strand Gene LocusTag Fraction Hydantoin (N) remove 652,116 - Atu3597 0.71 +0.9 652,116 - Atu3597 0.71 +0.2 652,272 + Atu3597 0.89 +0.2 652,272 + Atu3597 0.89 +0.3 652,439 + +0.4 652,472 - +0.6 652,472 - +0.3 652,525 - Atu3598 0.16 -0.1 652,811 - Atu3598 0.59 -0.0 652,954 - Atu3598 0.80 -0.2
Or see this region's nucleotide sequence