Experiment: Hydantoin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3035 and Atu3036 are separated by 243 nucleotides Atu3036 and Atu3037 overlap by 1 nucleotides Atu3037 and Atu3038 are separated by 4 nucleotides
Atu3035: Atu3035 - two component response regulator, at 27,551 to 29,794
Atu3035
Atu3036: Atu3036 - dipeptide ABC transporter permease, at 30,038 to 31,066
Atu3036
Atu3037: Atu3037 - dipeptide ABC transporter permease, at 31,066 to 31,947
Atu3037
Atu3038: Atu3038 - dipeptide ABC transporter ATPase, at 31,952 to 33,598
Atu3038
Position (kb)
30
31
32 Strain fitness (log2 ratio)
-2
-1
0
1 at 29.053 kb on - strand, within Atu3035 at 29.100 kb on - strand, within Atu3035 at 29.100 kb on - strand, within Atu3035 at 29.212 kb on + strand, within Atu3035 at 29.298 kb on - strand, within Atu3035 at 29.375 kb on + strand, within Atu3035 at 29.435 kb on + strand, within Atu3035 at 29.618 kb on - strand at 29.676 kb on + strand at 29.678 kb on + strand at 29.762 kb on + strand at 29.762 kb on + strand at 29.772 kb on - strand at 29.896 kb on - strand at 30.091 kb on + strand at 30.358 kb on + strand, within Atu3036 at 30.358 kb on + strand, within Atu3036 at 30.358 kb on + strand, within Atu3036 at 30.596 kb on - strand, within Atu3036 at 30.758 kb on - strand, within Atu3036 at 30.938 kb on - strand, within Atu3036 at 30.946 kb on + strand, within Atu3036 at 31.006 kb on + strand at 31.099 kb on - strand at 31.104 kb on - strand at 31.131 kb on - strand at 31.231 kb on - strand, within Atu3037 at 31.342 kb on - strand, within Atu3037 at 31.379 kb on + strand, within Atu3037 at 31.402 kb on + strand, within Atu3037 at 31.405 kb on - strand, within Atu3037 at 31.587 kb on + strand, within Atu3037 at 31.669 kb on + strand, within Atu3037 at 31.718 kb on - strand, within Atu3037 at 31.718 kb on - strand, within Atu3037 at 31.718 kb on - strand, within Atu3037 at 31.764 kb on - strand, within Atu3037 at 31.793 kb on + strand, within Atu3037 at 31.800 kb on - strand, within Atu3037 at 31.801 kb on - strand, within Atu3037 at 31.857 kb on + strand, within Atu3037 at 31.862 kb on + strand at 31.865 kb on - strand at 31.870 kb on - strand at 31.873 kb on + strand at 31.873 kb on + strand at 31.895 kb on + strand at 31.956 kb on - strand at 31.961 kb on - strand at 32.008 kb on - strand at 32.021 kb on + strand at 32.029 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Hydantoin (N) remove 29,053 - Atu3035 0.67 +0.2 29,100 - Atu3035 0.69 +0.8 29,100 - Atu3035 0.69 +0.2 29,212 + Atu3035 0.74 -0.2 29,298 - Atu3035 0.78 +0.1 29,375 + Atu3035 0.81 +0.0 29,435 + Atu3035 0.84 -0.2 29,618 - +0.4 29,676 + -1.4 29,678 + +0.1 29,762 + -0.4 29,762 + +0.5 29,772 - -1.4 29,896 - +0.2 30,091 + -0.4 30,358 + Atu3036 0.31 -0.6 30,358 + Atu3036 0.31 +0.1 30,358 + Atu3036 0.31 -1.0 30,596 - Atu3036 0.54 -0.5 30,758 - Atu3036 0.70 -1.6 30,938 - Atu3036 0.87 +0.1 30,946 + Atu3036 0.88 +0.3 31,006 + +0.1 31,099 - +0.2 31,104 - -0.2 31,131 - -0.4 31,231 - Atu3037 0.19 +0.4 31,342 - Atu3037 0.31 +0.4 31,379 + Atu3037 0.35 -0.3 31,402 + Atu3037 0.38 -0.2 31,405 - Atu3037 0.38 -2.5 31,587 + Atu3037 0.59 -0.2 31,669 + Atu3037 0.68 -0.5 31,718 - Atu3037 0.74 -0.3 31,718 - Atu3037 0.74 -0.0 31,718 - Atu3037 0.74 -0.4 31,764 - Atu3037 0.79 -0.2 31,793 + Atu3037 0.82 -0.4 31,800 - Atu3037 0.83 -0.2 31,801 - Atu3037 0.83 +0.1 31,857 + Atu3037 0.90 +0.3 31,862 + -0.8 31,865 - -0.0 31,870 - -0.2 31,873 + -0.0 31,873 + -0.0 31,895 + +0.8 31,956 - +0.6 31,961 - +0.7 32,008 - -0.2 32,021 + +0.2 32,029 - +0.1
Or see this region's nucleotide sequence