Strain Fitness in Agrobacterium fabrum C58 around Atu3036

Experiment: Hydantoin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3035 and Atu3036 are separated by 243 nucleotidesAtu3036 and Atu3037 overlap by 1 nucleotidesAtu3037 and Atu3038 are separated by 4 nucleotides Atu3035: Atu3035 - two component response regulator, at 27,551 to 29,794 Atu3035 Atu3036: Atu3036 - dipeptide ABC transporter permease, at 30,038 to 31,066 Atu3036 Atu3037: Atu3037 - dipeptide ABC transporter permease, at 31,066 to 31,947 Atu3037 Atu3038: Atu3038 - dipeptide ABC transporter ATPase, at 31,952 to 33,598 Atu3038 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1at 29.053 kb on - strand, within Atu3035at 29.100 kb on - strand, within Atu3035at 29.100 kb on - strand, within Atu3035at 29.212 kb on + strand, within Atu3035at 29.298 kb on - strand, within Atu3035at 29.375 kb on + strand, within Atu3035at 29.435 kb on + strand, within Atu3035at 29.618 kb on - strandat 29.676 kb on + strandat 29.678 kb on + strandat 29.762 kb on + strandat 29.762 kb on + strandat 29.772 kb on - strandat 29.896 kb on - strandat 30.091 kb on + strandat 30.358 kb on + strand, within Atu3036at 30.358 kb on + strand, within Atu3036at 30.358 kb on + strand, within Atu3036at 30.596 kb on - strand, within Atu3036at 30.758 kb on - strand, within Atu3036at 30.938 kb on - strand, within Atu3036at 30.946 kb on + strand, within Atu3036at 31.006 kb on + strandat 31.099 kb on - strandat 31.104 kb on - strandat 31.131 kb on - strandat 31.231 kb on - strand, within Atu3037at 31.342 kb on - strand, within Atu3037at 31.379 kb on + strand, within Atu3037at 31.402 kb on + strand, within Atu3037at 31.405 kb on - strand, within Atu3037at 31.587 kb on + strand, within Atu3037at 31.669 kb on + strand, within Atu3037at 31.718 kb on - strand, within Atu3037at 31.718 kb on - strand, within Atu3037at 31.718 kb on - strand, within Atu3037at 31.764 kb on - strand, within Atu3037at 31.793 kb on + strand, within Atu3037at 31.800 kb on - strand, within Atu3037at 31.801 kb on - strand, within Atu3037at 31.857 kb on + strand, within Atu3037at 31.862 kb on + strandat 31.865 kb on - strandat 31.870 kb on - strandat 31.873 kb on + strandat 31.873 kb on + strandat 31.895 kb on + strandat 31.956 kb on - strandat 31.961 kb on - strandat 32.008 kb on - strandat 32.021 kb on + strandat 32.029 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydantoin (N)
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29,053 - Atu3035 0.67 +0.2
29,100 - Atu3035 0.69 +0.8
29,100 - Atu3035 0.69 +0.2
29,212 + Atu3035 0.74 -0.2
29,298 - Atu3035 0.78 +0.1
29,375 + Atu3035 0.81 +0.0
29,435 + Atu3035 0.84 -0.2
29,618 - +0.4
29,676 + -1.4
29,678 + +0.1
29,762 + -0.4
29,762 + +0.5
29,772 - -1.4
29,896 - +0.2
30,091 + -0.4
30,358 + Atu3036 0.31 -0.6
30,358 + Atu3036 0.31 +0.1
30,358 + Atu3036 0.31 -1.0
30,596 - Atu3036 0.54 -0.5
30,758 - Atu3036 0.70 -1.6
30,938 - Atu3036 0.87 +0.1
30,946 + Atu3036 0.88 +0.3
31,006 + +0.1
31,099 - +0.2
31,104 - -0.2
31,131 - -0.4
31,231 - Atu3037 0.19 +0.4
31,342 - Atu3037 0.31 +0.4
31,379 + Atu3037 0.35 -0.3
31,402 + Atu3037 0.38 -0.2
31,405 - Atu3037 0.38 -2.5
31,587 + Atu3037 0.59 -0.2
31,669 + Atu3037 0.68 -0.5
31,718 - Atu3037 0.74 -0.3
31,718 - Atu3037 0.74 -0.0
31,718 - Atu3037 0.74 -0.4
31,764 - Atu3037 0.79 -0.2
31,793 + Atu3037 0.82 -0.4
31,800 - Atu3037 0.83 -0.2
31,801 - Atu3037 0.83 +0.1
31,857 + Atu3037 0.90 +0.3
31,862 + -0.8
31,865 - -0.0
31,870 - -0.2
31,873 + -0.0
31,873 + -0.0
31,895 + +0.8
31,956 - +0.6
31,961 - +0.7
32,008 - -0.2
32,021 + +0.2
32,029 - +0.1

Or see this region's nucleotide sequence