Strain Fitness in Agrobacterium fabrum C58 around Atu2650

Experiment: Hydantoin (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2647 and Atu2648 are separated by 7 nucleotidesAtu2648 and Atu2649 are separated by 6 nucleotidesAtu2649 and Atu2650 are separated by 87 nucleotidesAtu2650 and Atu2651 overlap by 1 nucleotides Atu2647: Atu2647 - hypothetical protein, at 2,632,044 to 2,632,688 Atu2647 Atu2648: Atu2648 - hypothetical protein, at 2,632,696 to 2,633,139 Atu2648 Atu2649: Atu2649 - hypothetical protein, at 2,633,146 to 2,633,439 Atu2649 Atu2650: Atu2650 - glycerol-3-phosphate dehydrogenase, at 2,633,527 to 2,634,510 Atu2650 Atu2651: Atu2651 - O-sialoglycoprotein endopeptidase, at 2,634,510 to 2,635,607 Atu2651 Position (kb) 2633 2634 2635Strain fitness (log2 ratio) -2 -1 0 1 2at 2632.529 kb on - strand, within Atu2647at 2632.536 kb on - strand, within Atu2647at 2632.580 kb on + strand, within Atu2647at 2632.588 kb on - strand, within Atu2647at 2632.675 kb on + strandat 2632.783 kb on - strand, within Atu2648at 2632.807 kb on - strand, within Atu2648at 2632.883 kb on + strand, within Atu2648at 2632.959 kb on - strand, within Atu2648at 2632.967 kb on - strand, within Atu2648at 2632.984 kb on + strand, within Atu2648at 2633.072 kb on + strand, within Atu2648at 2633.080 kb on - strand, within Atu2648at 2633.098 kb on - strandat 2633.109 kb on + strandat 2633.109 kb on + strandat 2633.114 kb on + strandat 2633.114 kb on + strandat 2633.122 kb on - strandat 2633.161 kb on + strandat 2633.195 kb on + strand, within Atu2649at 2633.195 kb on + strand, within Atu2649at 2633.195 kb on + strand, within Atu2649at 2633.205 kb on + strand, within Atu2649at 2633.370 kb on - strand, within Atu2649at 2633.416 kb on - strandat 2633.449 kb on - strandat 2633.474 kb on + strandat 2633.565 kb on - strandat 2633.575 kb on - strandat 2633.686 kb on - strand, within Atu2650at 2633.903 kb on - strand, within Atu2650at 2633.948 kb on + strand, within Atu2650at 2633.948 kb on + strand, within Atu2650at 2633.948 kb on + strand, within Atu2650at 2633.963 kb on - strand, within Atu2650at 2634.038 kb on + strand, within Atu2650at 2634.111 kb on + strand, within Atu2650at 2634.119 kb on - strand, within Atu2650at 2634.138 kb on - strand, within Atu2650at 2634.235 kb on + strand, within Atu2650at 2634.235 kb on + strand, within Atu2650at 2634.243 kb on - strand, within Atu2650at 2634.243 kb on - strand, within Atu2650at 2634.243 kb on - strand, within Atu2650at 2634.303 kb on + strand, within Atu2650at 2634.340 kb on + strand, within Atu2650at 2634.340 kb on + strand, within Atu2650at 2634.348 kb on - strand, within Atu2650at 2634.364 kb on + strand, within Atu2650at 2634.464 kb on + strandat 2634.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hydantoin (N)
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2,632,529 - Atu2647 0.75 +0.1
2,632,536 - Atu2647 0.76 -1.1
2,632,580 + Atu2647 0.83 +0.2
2,632,588 - Atu2647 0.84 -0.1
2,632,675 + -0.2
2,632,783 - Atu2648 0.20 +0.3
2,632,807 - Atu2648 0.25 +0.0
2,632,883 + Atu2648 0.42 -1.5
2,632,959 - Atu2648 0.59 +0.2
2,632,967 - Atu2648 0.61 +0.9
2,632,984 + Atu2648 0.65 +0.3
2,633,072 + Atu2648 0.85 +0.1
2,633,080 - Atu2648 0.86 -0.1
2,633,098 - -0.0
2,633,109 + +0.4
2,633,109 + +0.7
2,633,114 + -0.5
2,633,114 + -0.8
2,633,122 - +0.5
2,633,161 + +0.0
2,633,195 + Atu2649 0.17 +0.4
2,633,195 + Atu2649 0.17 +0.0
2,633,195 + Atu2649 0.17 +0.4
2,633,205 + Atu2649 0.20 +0.4
2,633,370 - Atu2649 0.76 -0.5
2,633,416 - +0.3
2,633,449 - +0.0
2,633,474 + +2.1
2,633,565 - -1.4
2,633,575 - -1.2
2,633,686 - Atu2650 0.16 -1.4
2,633,903 - Atu2650 0.38 +1.7
2,633,948 + Atu2650 0.43 -1.4
2,633,948 + Atu2650 0.43 -2.2
2,633,948 + Atu2650 0.43 -2.3
2,633,963 - Atu2650 0.44 -1.6
2,634,038 + Atu2650 0.52 -2.4
2,634,111 + Atu2650 0.59 -2.1
2,634,119 - Atu2650 0.60 -0.4
2,634,138 - Atu2650 0.62 -2.0
2,634,235 + Atu2650 0.72 -1.4
2,634,235 + Atu2650 0.72 -1.5
2,634,243 - Atu2650 0.73 -1.5
2,634,243 - Atu2650 0.73 -1.0
2,634,243 - Atu2650 0.73 -0.9
2,634,303 + Atu2650 0.79 -1.4
2,634,340 + Atu2650 0.83 -1.5
2,634,340 + Atu2650 0.83 -0.7
2,634,348 - Atu2650 0.83 -2.2
2,634,364 + Atu2650 0.85 -2.6
2,634,464 + -1.8
2,634,464 + -2.1

Or see this region's nucleotide sequence