Experiment: Hydantoin (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0271 and Atu0272 are separated by 110 nucleotides Atu0272 and Atu0273 are separated by 96 nucleotides Atu0273 and Atu0274 are separated by 8 nucleotides
Atu0271: Atu0271 - transcriptional regulator, GntR family, at 267,893 to 268,600
Atu0271
Atu0272: Atu0272 - transcriptional regulator, MarR family, at 268,711 to 269,196
Atu0272
Atu0273: Atu0273 - regulator protein pecM, at 269,293 to 270,156
Atu0273
Atu0274: Atu0274 - aminopeptidase, at 270,165 to 271,403
Atu0274
Position (kb) 269
270
271 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 268.334 kb on - strand, within Atu0271 at 268.355 kb on + strand, within Atu0271 at 268.357 kb on + strand, within Atu0271 at 268.528 kb on + strand, within Atu0271 at 268.668 kb on + strand at 268.668 kb on + strand at 268.757 kb on - strand at 268.817 kb on + strand, within Atu0272 at 268.952 kb on + strand, within Atu0272 at 269.065 kb on - strand, within Atu0272 at 269.091 kb on + strand, within Atu0272 at 269.099 kb on - strand, within Atu0272 at 269.325 kb on + strand at 269.480 kb on + strand, within Atu0273 at 269.727 kb on - strand, within Atu0273 at 269.790 kb on - strand, within Atu0273 at 269.790 kb on - strand, within Atu0273 at 269.873 kb on + strand, within Atu0273 at 269.881 kb on - strand, within Atu0273 at 269.923 kb on + strand, within Atu0273 at 269.941 kb on - strand, within Atu0273 at 269.958 kb on + strand, within Atu0273 at 270.046 kb on + strand, within Atu0273 at 270.107 kb on - strand at 270.133 kb on - strand at 270.151 kb on + strand at 270.267 kb on - strand at 270.289 kb on + strand, within Atu0274 at 270.302 kb on - strand, within Atu0274 at 270.337 kb on + strand, within Atu0274 at 270.492 kb on - strand, within Atu0274 at 270.515 kb on - strand, within Atu0274 at 270.632 kb on + strand, within Atu0274 at 270.765 kb on - strand, within Atu0274 at 270.907 kb on - strand, within Atu0274 at 270.932 kb on + strand, within Atu0274 at 270.937 kb on + strand, within Atu0274 at 270.946 kb on + strand, within Atu0274 at 271.014 kb on - strand, within Atu0274 at 271.125 kb on - strand, within Atu0274 at 271.130 kb on - strand, within Atu0274
Per-strain Table
Position Strand Gene LocusTag Fraction Hydantoin (N) remove 268,334 - Atu0271 0.62 +0.3 268,355 + Atu0271 0.65 +0.1 268,357 + Atu0271 0.66 +0.3 268,528 + Atu0271 0.90 +0.4 268,668 + -1.8 268,668 + -0.2 268,757 - +2.6 268,817 + Atu0272 0.22 +3.3 268,952 + Atu0272 0.50 +2.5 269,065 - Atu0272 0.73 +2.5 269,091 + Atu0272 0.78 +2.3 269,099 - Atu0272 0.80 +3.4 269,325 + -0.7 269,480 + Atu0273 0.22 -0.6 269,727 - Atu0273 0.50 +0.1 269,790 - Atu0273 0.58 -1.1 269,790 - Atu0273 0.58 -0.1 269,873 + Atu0273 0.67 -0.6 269,881 - Atu0273 0.68 +0.0 269,923 + Atu0273 0.73 +0.7 269,941 - Atu0273 0.75 -0.1 269,958 + Atu0273 0.77 +0.3 270,046 + Atu0273 0.87 +0.4 270,107 - +0.0 270,133 - +0.5 270,151 + -0.1 270,267 - -0.2 270,289 + Atu0274 0.10 +0.5 270,302 - Atu0274 0.11 +0.0 270,337 + Atu0274 0.14 +0.2 270,492 - Atu0274 0.26 +0.2 270,515 - Atu0274 0.28 +1.0 270,632 + Atu0274 0.38 +0.7 270,765 - Atu0274 0.48 +0.2 270,907 - Atu0274 0.60 +0.3 270,932 + Atu0274 0.62 -0.5 270,937 + Atu0274 0.62 -0.3 270,946 + Atu0274 0.63 +0.5 271,014 - Atu0274 0.69 +0.3 271,125 - Atu0274 0.77 -0.2 271,130 - Atu0274 0.78 +0.4
Or see this region's nucleotide sequence