Experiment: deuterated glucose in H2O
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfF and nrfG overlap by 4 nucleotides nrfG and gltP are separated by 341 nucleotides gltP and yjcO are separated by 641 nucleotides
b4075: nrfF - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF (NCBI), at 4,291,186 to 4,291,569
nrfF
b4076: nrfG - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG (NCBI), at 4,291,566 to 4,292,162
nrfG
b4077: gltP - glutamate/aspartate:proton symporter (NCBI), at 4,292,504 to 4,293,817
gltP
b4078: yjcO - hypothetical protein (NCBI), at 4,294,459 to 4,295,148
yjcO
Position (kb)
4292
4293
4294 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4291.711 kb on - strand, within nrfG at 4291.800 kb on - strand, within nrfG at 4291.854 kb on + strand, within nrfG at 4291.859 kb on + strand, within nrfG at 4291.911 kb on + strand, within nrfG at 4291.911 kb on + strand, within nrfG at 4291.934 kb on + strand, within nrfG at 4291.982 kb on + strand, within nrfG at 4291.982 kb on + strand, within nrfG at 4292.106 kb on + strand at 4292.109 kb on + strand at 4292.112 kb on - strand at 4292.112 kb on - strand at 4292.114 kb on + strand at 4292.114 kb on + strand at 4292.131 kb on - strand at 4292.368 kb on + strand at 4292.368 kb on + strand at 4292.388 kb on + strand at 4292.479 kb on + strand at 4292.479 kb on + strand at 4292.479 kb on + strand at 4292.479 kb on + strand at 4292.479 kb on + strand at 4292.574 kb on + strand at 4292.594 kb on - strand at 4292.594 kb on - strand at 4292.699 kb on - strand, within gltP at 4292.771 kb on + strand, within gltP at 4292.771 kb on + strand, within gltP at 4292.792 kb on - strand, within gltP at 4292.851 kb on + strand, within gltP at 4292.851 kb on + strand, within gltP at 4292.897 kb on + strand, within gltP at 4292.897 kb on + strand, within gltP at 4292.897 kb on + strand, within gltP at 4292.960 kb on - strand, within gltP at 4293.079 kb on + strand, within gltP at 4293.115 kb on + strand, within gltP at 4293.115 kb on + strand, within gltP at 4293.166 kb on + strand, within gltP at 4293.199 kb on - strand, within gltP at 4293.199 kb on - strand, within gltP at 4293.227 kb on - strand, within gltP at 4293.340 kb on - strand, within gltP at 4293.340 kb on - strand, within gltP at 4293.363 kb on + strand, within gltP at 4293.455 kb on + strand, within gltP at 4293.465 kb on + strand, within gltP at 4293.493 kb on + strand, within gltP at 4293.497 kb on + strand, within gltP at 4293.503 kb on + strand, within gltP at 4293.508 kb on + strand, within gltP at 4293.618 kb on - strand, within gltP at 4293.676 kb on + strand, within gltP at 4293.676 kb on + strand, within gltP at 4293.686 kb on + strand at 4293.686 kb on + strand at 4293.688 kb on + strand at 4293.694 kb on - strand at 4293.744 kb on + strand at 4293.766 kb on + strand at 4293.766 kb on + strand at 4293.856 kb on - strand at 4293.856 kb on - strand at 4294.006 kb on + strand at 4294.006 kb on + strand at 4294.006 kb on + strand at 4294.006 kb on + strand at 4294.006 kb on + strand at 4294.127 kb on - strand at 4294.137 kb on - strand at 4294.493 kb on - strand at 4294.514 kb on - strand at 4294.514 kb on - strand at 4294.514 kb on - strand at 4294.514 kb on - strand at 4294.516 kb on + strand at 4294.516 kb on + strand at 4294.516 kb on + strand at 4294.539 kb on - strand, within yjcO at 4294.544 kb on + strand, within yjcO at 4294.574 kb on + strand, within yjcO at 4294.574 kb on + strand, within yjcO at 4294.590 kb on + strand, within yjcO at 4294.678 kb on - strand, within yjcO at 4294.704 kb on - strand, within yjcO at 4294.704 kb on - strand, within yjcO at 4294.710 kb on + strand, within yjcO at 4294.788 kb on - strand, within yjcO
Per-strain Table
Position Strand Gene LocusTag Fraction deuterated glucose in H2O remove 4,291,711 - nrfG b4076 0.24 -0.8 4,291,800 - nrfG b4076 0.39 +0.4 4,291,854 + nrfG b4076 0.48 +1.2 4,291,859 + nrfG b4076 0.49 -0.9 4,291,911 + nrfG b4076 0.58 -2.0 4,291,911 + nrfG b4076 0.58 -0.4 4,291,934 + nrfG b4076 0.62 +0.9 4,291,982 + nrfG b4076 0.70 +0.0 4,291,982 + nrfG b4076 0.70 +1.0 4,292,106 + +0.3 4,292,109 + +0.2 4,292,112 - +1.0 4,292,112 - +1.4 4,292,114 + -0.1 4,292,114 + +0.6 4,292,131 - +1.2 4,292,368 + +0.9 4,292,368 + +0.9 4,292,388 + +0.6 4,292,479 + +1.2 4,292,479 + +0.3 4,292,479 + +0.6 4,292,479 + +0.2 4,292,479 + +1.4 4,292,574 + +1.9 4,292,594 - +0.1 4,292,594 - +1.8 4,292,699 - gltP b4077 0.15 -0.1 4,292,771 + gltP b4077 0.20 +1.5 4,292,771 + gltP b4077 0.20 +1.2 4,292,792 - gltP b4077 0.22 +0.8 4,292,851 + gltP b4077 0.26 -0.3 4,292,851 + gltP b4077 0.26 -0.9 4,292,897 + gltP b4077 0.30 +0.4 4,292,897 + gltP b4077 0.30 +1.2 4,292,897 + gltP b4077 0.30 -0.7 4,292,960 - gltP b4077 0.35 +0.1 4,293,079 + gltP b4077 0.44 +0.6 4,293,115 + gltP b4077 0.46 +1.0 4,293,115 + gltP b4077 0.46 +0.4 4,293,166 + gltP b4077 0.50 +1.5 4,293,199 - gltP b4077 0.53 -0.8 4,293,199 - gltP b4077 0.53 +0.2 4,293,227 - gltP b4077 0.55 -0.1 4,293,340 - gltP b4077 0.64 +1.0 4,293,340 - gltP b4077 0.64 +1.1 4,293,363 + gltP b4077 0.65 +0.4 4,293,455 + gltP b4077 0.72 +0.7 4,293,465 + gltP b4077 0.73 -0.1 4,293,493 + gltP b4077 0.75 +0.3 4,293,497 + gltP b4077 0.76 +0.5 4,293,503 + gltP b4077 0.76 -0.2 4,293,508 + gltP b4077 0.76 +1.3 4,293,618 - gltP b4077 0.85 -0.2 4,293,676 + gltP b4077 0.89 +1.1 4,293,676 + gltP b4077 0.89 +1.5 4,293,686 + +0.4 4,293,686 + +1.1 4,293,688 + -1.9 4,293,694 - +0.5 4,293,744 + -0.8 4,293,766 + -1.9 4,293,766 + +1.8 4,293,856 - +0.0 4,293,856 - -0.7 4,294,006 + -0.1 4,294,006 + -1.2 4,294,006 + -0.5 4,294,006 + -2.0 4,294,006 + +0.2 4,294,127 - -0.1 4,294,137 - +0.9 4,294,493 - -0.8 4,294,514 - +0.2 4,294,514 - -0.1 4,294,514 - +0.5 4,294,514 - +0.4 4,294,516 + +0.2 4,294,516 + -0.9 4,294,516 + -0.9 4,294,539 - yjcO b4078 0.12 +0.2 4,294,544 + yjcO b4078 0.12 -0.7 4,294,574 + yjcO b4078 0.17 +0.8 4,294,574 + yjcO b4078 0.17 +2.2 4,294,590 + yjcO b4078 0.19 -1.2 4,294,678 - yjcO b4078 0.32 -0.5 4,294,704 - yjcO b4078 0.36 +0.8 4,294,704 - yjcO b4078 0.36 -0.5 4,294,710 + yjcO b4078 0.36 +0.1 4,294,788 - yjcO b4078 0.48 -0.2
Or see this region's nucleotide sequence