Strain Fitness in Escherichia coli BW25113 around b2358

Experiment: deuterated glucose in H2O

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfdL and yfdM overlap by 5 nucleotidesyfdM and yfdN overlap by 1 nucleotidesyfdN and oweS overlap by 4 nucleotidesoweS and yfdP are separated by 18 nucleotidesyfdP and yfdQ are separated by 65 nucleotides b2355: yfdL - CPS-53 (KpLE1) prophage; conserved protein (RefSeq), at 2,469,566 to 2,470,144 yfdL b2356: yfdM - orf, hypothetical protein (VIMSS), at 2,470,140 to 2,470,409 yfdM b2357: yfdN - CPS-53 (KpLE1) prophage; predicted protein (NCBI), at 2,470,409 to 2,470,903 yfdN b2358: oweS - CPS-53 (KpLE1) prophage; predicted defective phage replication protein O (RefSeq), at 2,470,900 to 2,471,607 oweS b2359: yfdP - CPS-53 (KpLE1) prophage; predicted protein (RefSeq), at 2,471,626 to 2,471,988 yfdP b2360: yfdQ - CPS-53 (KpLE1) prophage; predicted protein (NCBI), at 2,472,054 to 2,472,878 yfdQ Position (kb) 2470 2471 2472Strain fitness (log2 ratio) -2 -1 0 1 2at 2469.940 kb on - strand, within yfdLat 2469.942 kb on - strand, within yfdLat 2469.942 kb on - strand, within yfdLat 2469.998 kb on + strand, within yfdLat 2470.038 kb on - strand, within yfdLat 2470.038 kb on - strand, within yfdLat 2470.049 kb on - strand, within yfdLat 2470.049 kb on - strand, within yfdLat 2470.090 kb on - strandat 2470.168 kb on + strand, within yfdMat 2470.211 kb on - strand, within yfdMat 2470.448 kb on + strandat 2470.448 kb on + strandat 2470.477 kb on + strand, within yfdNat 2470.477 kb on + strand, within yfdNat 2470.484 kb on - strand, within yfdNat 2470.484 kb on - strand, within yfdNat 2470.741 kb on - strand, within yfdNat 2470.913 kb on - strandat 2470.928 kb on + strandat 2471.021 kb on - strand, within oweSat 2471.021 kb on - strand, within oweSat 2471.090 kb on + strand, within oweSat 2471.133 kb on + strand, within oweSat 2471.133 kb on + strand, within oweSat 2471.201 kb on + strand, within oweSat 2471.201 kb on + strand, within oweSat 2471.263 kb on + strand, within oweSat 2471.277 kb on - strand, within oweSat 2471.277 kb on - strand, within oweSat 2471.372 kb on + strand, within oweSat 2471.372 kb on + strand, within oweSat 2471.526 kb on + strand, within oweSat 2471.539 kb on - strandat 2471.605 kb on + strandat 2471.605 kb on + strandat 2471.765 kb on - strand, within yfdPat 2471.783 kb on + strand, within yfdPat 2471.835 kb on + strand, within yfdPat 2471.841 kb on - strand, within yfdPat 2471.906 kb on + strand, within yfdPat 2471.906 kb on + strand, within yfdPat 2471.909 kb on + strand, within yfdPat 2471.909 kb on + strand, within yfdPat 2471.913 kb on + strand, within yfdPat 2471.936 kb on + strand, within yfdPat 2471.936 kb on + strand, within yfdPat 2471.945 kb on + strand, within yfdPat 2471.945 kb on + strand, within yfdPat 2471.970 kb on + strandat 2471.970 kb on + strandat 2472.031 kb on + strandat 2472.074 kb on + strandat 2472.223 kb on - strand, within yfdQat 2472.227 kb on + strand, within yfdQat 2472.228 kb on - strand, within yfdQat 2472.235 kb on - strand, within yfdQat 2472.235 kb on - strand, within yfdQat 2472.258 kb on - strand, within yfdQat 2472.272 kb on - strand, within yfdQat 2472.287 kb on - strand, within yfdQat 2472.287 kb on - strand, within yfdQat 2472.297 kb on - strand, within yfdQat 2472.303 kb on - strand, within yfdQat 2472.309 kb on + strand, within yfdQat 2472.309 kb on + strand, within yfdQat 2472.317 kb on - strand, within yfdQat 2472.317 kb on - strand, within yfdQat 2472.336 kb on + strand, within yfdQat 2472.337 kb on + strand, within yfdQat 2472.337 kb on + strand, within yfdQat 2472.339 kb on - strand, within yfdQat 2472.340 kb on - strand, within yfdQat 2472.343 kb on - strand, within yfdQat 2472.346 kb on + strand, within yfdQat 2472.346 kb on - strand, within yfdQat 2472.353 kb on - strand, within yfdQat 2472.362 kb on - strand, within yfdQat 2472.363 kb on - strand, within yfdQat 2472.367 kb on - strand, within yfdQat 2472.367 kb on - strand, within yfdQat 2472.404 kb on + strand, within yfdQat 2472.410 kb on - strand, within yfdQat 2472.410 kb on - strand, within yfdQat 2472.417 kb on - strand, within yfdQat 2472.417 kb on - strand, within yfdQat 2472.451 kb on - strand, within yfdQat 2472.490 kb on - strand, within yfdQat 2472.492 kb on - strand, within yfdQat 2472.511 kb on - strand, within yfdQat 2472.577 kb on - strand, within yfdQat 2472.577 kb on - strand, within yfdQat 2472.578 kb on - strand, within yfdQat 2472.591 kb on - strand, within yfdQ

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Per-strain Table

Position Strand Gene LocusTag Fraction deuterated glucose in H2O
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2,469,940 - yfdL b2355 0.65 -0.9
2,469,942 - yfdL b2355 0.65 -0.5
2,469,942 - yfdL b2355 0.65 +0.2
2,469,998 + yfdL b2355 0.75 +0.3
2,470,038 - yfdL b2355 0.82 -0.1
2,470,038 - yfdL b2355 0.82 +0.6
2,470,049 - yfdL b2355 0.83 -1.2
2,470,049 - yfdL b2355 0.83 +0.3
2,470,090 - -1.2
2,470,168 + yfdM b2356 0.10 -0.5
2,470,211 - yfdM b2356 0.26 -0.4
2,470,448 + +1.4
2,470,448 + -1.8
2,470,477 + yfdN b2357 0.14 -0.6
2,470,477 + yfdN b2357 0.14 +0.1
2,470,484 - yfdN b2357 0.15 +0.5
2,470,484 - yfdN b2357 0.15 -0.5
2,470,741 - yfdN b2357 0.67 -1.4
2,470,913 - -0.3
2,470,928 + +0.5
2,471,021 - oweS b2358 0.17 -1.1
2,471,021 - oweS b2358 0.17 -0.9
2,471,090 + oweS b2358 0.27 -1.4
2,471,133 + oweS b2358 0.33 +0.4
2,471,133 + oweS b2358 0.33 -0.0
2,471,201 + oweS b2358 0.43 -1.6
2,471,201 + oweS b2358 0.43 -1.1
2,471,263 + oweS b2358 0.51 -1.9
2,471,277 - oweS b2358 0.53 -1.7
2,471,277 - oweS b2358 0.53 +0.8
2,471,372 + oweS b2358 0.67 +0.3
2,471,372 + oweS b2358 0.67 -0.4
2,471,526 + oweS b2358 0.88 +0.8
2,471,539 - +0.0
2,471,605 + -1.4
2,471,605 + +0.2
2,471,765 - yfdP b2359 0.38 +0.3
2,471,783 + yfdP b2359 0.43 -0.2
2,471,835 + yfdP b2359 0.58 +1.1
2,471,841 - yfdP b2359 0.59 +0.3
2,471,906 + yfdP b2359 0.77 -0.4
2,471,906 + yfdP b2359 0.77 -0.8
2,471,909 + yfdP b2359 0.78 +0.0
2,471,909 + yfdP b2359 0.78 -1.1
2,471,913 + yfdP b2359 0.79 -0.7
2,471,936 + yfdP b2359 0.85 -1.4
2,471,936 + yfdP b2359 0.85 -0.8
2,471,945 + yfdP b2359 0.88 +1.2
2,471,945 + yfdP b2359 0.88 +0.6
2,471,970 + -2.4
2,471,970 + +1.2
2,472,031 + +1.2
2,472,074 + -0.9
2,472,223 - yfdQ b2360 0.20 -0.5
2,472,227 + yfdQ b2360 0.21 -0.6
2,472,228 - yfdQ b2360 0.21 -1.6
2,472,235 - yfdQ b2360 0.22 +0.1
2,472,235 - yfdQ b2360 0.22 -0.8
2,472,258 - yfdQ b2360 0.25 -0.2
2,472,272 - yfdQ b2360 0.26 -0.6
2,472,287 - yfdQ b2360 0.28 -0.3
2,472,287 - yfdQ b2360 0.28 -2.7
2,472,297 - yfdQ b2360 0.29 -0.1
2,472,303 - yfdQ b2360 0.30 +0.4
2,472,309 + yfdQ b2360 0.31 -0.6
2,472,309 + yfdQ b2360 0.31 -1.9
2,472,317 - yfdQ b2360 0.32 +0.2
2,472,317 - yfdQ b2360 0.32 +0.1
2,472,336 + yfdQ b2360 0.34 +0.9
2,472,337 + yfdQ b2360 0.34 +1.4
2,472,337 + yfdQ b2360 0.34 -0.4
2,472,339 - yfdQ b2360 0.35 -1.0
2,472,340 - yfdQ b2360 0.35 -1.8
2,472,343 - yfdQ b2360 0.35 -1.8
2,472,346 + yfdQ b2360 0.35 +0.5
2,472,346 - yfdQ b2360 0.35 +0.8
2,472,353 - yfdQ b2360 0.36 -1.3
2,472,362 - yfdQ b2360 0.37 -0.7
2,472,363 - yfdQ b2360 0.37 -0.2
2,472,367 - yfdQ b2360 0.38 +1.4
2,472,367 - yfdQ b2360 0.38 -0.7
2,472,404 + yfdQ b2360 0.42 -1.6
2,472,410 - yfdQ b2360 0.43 -0.4
2,472,410 - yfdQ b2360 0.43 +0.8
2,472,417 - yfdQ b2360 0.44 +1.0
2,472,417 - yfdQ b2360 0.44 +0.6
2,472,451 - yfdQ b2360 0.48 -0.7
2,472,490 - yfdQ b2360 0.53 +0.0
2,472,492 - yfdQ b2360 0.53 +1.4
2,472,511 - yfdQ b2360 0.55 +2.4
2,472,577 - yfdQ b2360 0.63 -1.3
2,472,577 - yfdQ b2360 0.63 -1.3
2,472,578 - yfdQ b2360 0.64 +0.6
2,472,591 - yfdQ b2360 0.65 -1.2

Or see this region's nucleotide sequence