Experiment: deuterated glucose in H2O
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yfdL and yfdM overlap by 5 nucleotides yfdM and yfdN overlap by 1 nucleotides yfdN and oweS overlap by 4 nucleotides oweS and yfdP are separated by 18 nucleotides yfdP and yfdQ are separated by 65 nucleotides
b2355: yfdL - CPS-53 (KpLE1) prophage; conserved protein (RefSeq), at 2,469,566 to 2,470,144
yfdL
b2356: yfdM - orf, hypothetical protein (VIMSS), at 2,470,140 to 2,470,409
yfdM
b2357: yfdN - CPS-53 (KpLE1) prophage; predicted protein (NCBI), at 2,470,409 to 2,470,903
yfdN
b2358: oweS - CPS-53 (KpLE1) prophage; predicted defective phage replication protein O (RefSeq), at 2,470,900 to 2,471,607
oweS
b2359: yfdP - CPS-53 (KpLE1) prophage; predicted protein (RefSeq), at 2,471,626 to 2,471,988
yfdP
b2360: yfdQ - CPS-53 (KpLE1) prophage; predicted protein (NCBI), at 2,472,054 to 2,472,878
yfdQ
Position (kb)
2470
2471
2472 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2469.940 kb on - strand, within yfdL at 2469.942 kb on - strand, within yfdL at 2469.942 kb on - strand, within yfdL at 2469.998 kb on + strand, within yfdL at 2470.038 kb on - strand, within yfdL at 2470.038 kb on - strand, within yfdL at 2470.049 kb on - strand, within yfdL at 2470.049 kb on - strand, within yfdL at 2470.090 kb on - strand at 2470.168 kb on + strand, within yfdM at 2470.211 kb on - strand, within yfdM at 2470.448 kb on + strand at 2470.448 kb on + strand at 2470.477 kb on + strand, within yfdN at 2470.477 kb on + strand, within yfdN at 2470.484 kb on - strand, within yfdN at 2470.484 kb on - strand, within yfdN at 2470.741 kb on - strand, within yfdN at 2470.913 kb on - strand at 2470.928 kb on + strand at 2471.021 kb on - strand, within oweS at 2471.021 kb on - strand, within oweS at 2471.090 kb on + strand, within oweS at 2471.133 kb on + strand, within oweS at 2471.133 kb on + strand, within oweS at 2471.201 kb on + strand, within oweS at 2471.201 kb on + strand, within oweS at 2471.263 kb on + strand, within oweS at 2471.277 kb on - strand, within oweS at 2471.277 kb on - strand, within oweS at 2471.372 kb on + strand, within oweS at 2471.372 kb on + strand, within oweS at 2471.526 kb on + strand, within oweS at 2471.539 kb on - strand at 2471.605 kb on + strand at 2471.605 kb on + strand at 2471.765 kb on - strand, within yfdP at 2471.783 kb on + strand, within yfdP at 2471.835 kb on + strand, within yfdP at 2471.841 kb on - strand, within yfdP at 2471.906 kb on + strand, within yfdP at 2471.906 kb on + strand, within yfdP at 2471.909 kb on + strand, within yfdP at 2471.909 kb on + strand, within yfdP at 2471.913 kb on + strand, within yfdP at 2471.936 kb on + strand, within yfdP at 2471.936 kb on + strand, within yfdP at 2471.945 kb on + strand, within yfdP at 2471.945 kb on + strand, within yfdP at 2471.970 kb on + strand at 2471.970 kb on + strand at 2472.031 kb on + strand at 2472.074 kb on + strand at 2472.223 kb on - strand, within yfdQ at 2472.227 kb on + strand, within yfdQ at 2472.228 kb on - strand, within yfdQ at 2472.235 kb on - strand, within yfdQ at 2472.235 kb on - strand, within yfdQ at 2472.258 kb on - strand, within yfdQ at 2472.272 kb on - strand, within yfdQ at 2472.287 kb on - strand, within yfdQ at 2472.287 kb on - strand, within yfdQ at 2472.297 kb on - strand, within yfdQ at 2472.303 kb on - strand, within yfdQ at 2472.309 kb on + strand, within yfdQ at 2472.309 kb on + strand, within yfdQ at 2472.317 kb on - strand, within yfdQ at 2472.317 kb on - strand, within yfdQ at 2472.336 kb on + strand, within yfdQ at 2472.337 kb on + strand, within yfdQ at 2472.337 kb on + strand, within yfdQ at 2472.339 kb on - strand, within yfdQ at 2472.340 kb on - strand, within yfdQ at 2472.343 kb on - strand, within yfdQ at 2472.346 kb on + strand, within yfdQ at 2472.346 kb on - strand, within yfdQ at 2472.353 kb on - strand, within yfdQ at 2472.362 kb on - strand, within yfdQ at 2472.363 kb on - strand, within yfdQ at 2472.367 kb on - strand, within yfdQ at 2472.367 kb on - strand, within yfdQ at 2472.404 kb on + strand, within yfdQ at 2472.410 kb on - strand, within yfdQ at 2472.410 kb on - strand, within yfdQ at 2472.417 kb on - strand, within yfdQ at 2472.417 kb on - strand, within yfdQ at 2472.451 kb on - strand, within yfdQ at 2472.490 kb on - strand, within yfdQ at 2472.492 kb on - strand, within yfdQ at 2472.511 kb on - strand, within yfdQ at 2472.577 kb on - strand, within yfdQ at 2472.577 kb on - strand, within yfdQ at 2472.578 kb on - strand, within yfdQ at 2472.591 kb on - strand, within yfdQ
Per-strain Table
Position Strand Gene LocusTag Fraction deuterated glucose in H2O remove 2,469,940 - yfdL b2355 0.65 -0.9 2,469,942 - yfdL b2355 0.65 -0.5 2,469,942 - yfdL b2355 0.65 +0.2 2,469,998 + yfdL b2355 0.75 +0.3 2,470,038 - yfdL b2355 0.82 -0.1 2,470,038 - yfdL b2355 0.82 +0.6 2,470,049 - yfdL b2355 0.83 -1.2 2,470,049 - yfdL b2355 0.83 +0.3 2,470,090 - -1.2 2,470,168 + yfdM b2356 0.10 -0.5 2,470,211 - yfdM b2356 0.26 -0.4 2,470,448 + +1.4 2,470,448 + -1.8 2,470,477 + yfdN b2357 0.14 -0.6 2,470,477 + yfdN b2357 0.14 +0.1 2,470,484 - yfdN b2357 0.15 +0.5 2,470,484 - yfdN b2357 0.15 -0.5 2,470,741 - yfdN b2357 0.67 -1.4 2,470,913 - -0.3 2,470,928 + +0.5 2,471,021 - oweS b2358 0.17 -1.1 2,471,021 - oweS b2358 0.17 -0.9 2,471,090 + oweS b2358 0.27 -1.4 2,471,133 + oweS b2358 0.33 +0.4 2,471,133 + oweS b2358 0.33 -0.0 2,471,201 + oweS b2358 0.43 -1.6 2,471,201 + oweS b2358 0.43 -1.1 2,471,263 + oweS b2358 0.51 -1.9 2,471,277 - oweS b2358 0.53 -1.7 2,471,277 - oweS b2358 0.53 +0.8 2,471,372 + oweS b2358 0.67 +0.3 2,471,372 + oweS b2358 0.67 -0.4 2,471,526 + oweS b2358 0.88 +0.8 2,471,539 - +0.0 2,471,605 + -1.4 2,471,605 + +0.2 2,471,765 - yfdP b2359 0.38 +0.3 2,471,783 + yfdP b2359 0.43 -0.2 2,471,835 + yfdP b2359 0.58 +1.1 2,471,841 - yfdP b2359 0.59 +0.3 2,471,906 + yfdP b2359 0.77 -0.4 2,471,906 + yfdP b2359 0.77 -0.8 2,471,909 + yfdP b2359 0.78 +0.0 2,471,909 + yfdP b2359 0.78 -1.1 2,471,913 + yfdP b2359 0.79 -0.7 2,471,936 + yfdP b2359 0.85 -1.4 2,471,936 + yfdP b2359 0.85 -0.8 2,471,945 + yfdP b2359 0.88 +1.2 2,471,945 + yfdP b2359 0.88 +0.6 2,471,970 + -2.4 2,471,970 + +1.2 2,472,031 + +1.2 2,472,074 + -0.9 2,472,223 - yfdQ b2360 0.20 -0.5 2,472,227 + yfdQ b2360 0.21 -0.6 2,472,228 - yfdQ b2360 0.21 -1.6 2,472,235 - yfdQ b2360 0.22 +0.1 2,472,235 - yfdQ b2360 0.22 -0.8 2,472,258 - yfdQ b2360 0.25 -0.2 2,472,272 - yfdQ b2360 0.26 -0.6 2,472,287 - yfdQ b2360 0.28 -0.3 2,472,287 - yfdQ b2360 0.28 -2.7 2,472,297 - yfdQ b2360 0.29 -0.1 2,472,303 - yfdQ b2360 0.30 +0.4 2,472,309 + yfdQ b2360 0.31 -0.6 2,472,309 + yfdQ b2360 0.31 -1.9 2,472,317 - yfdQ b2360 0.32 +0.2 2,472,317 - yfdQ b2360 0.32 +0.1 2,472,336 + yfdQ b2360 0.34 +0.9 2,472,337 + yfdQ b2360 0.34 +1.4 2,472,337 + yfdQ b2360 0.34 -0.4 2,472,339 - yfdQ b2360 0.35 -1.0 2,472,340 - yfdQ b2360 0.35 -1.8 2,472,343 - yfdQ b2360 0.35 -1.8 2,472,346 + yfdQ b2360 0.35 +0.5 2,472,346 - yfdQ b2360 0.35 +0.8 2,472,353 - yfdQ b2360 0.36 -1.3 2,472,362 - yfdQ b2360 0.37 -0.7 2,472,363 - yfdQ b2360 0.37 -0.2 2,472,367 - yfdQ b2360 0.38 +1.4 2,472,367 - yfdQ b2360 0.38 -0.7 2,472,404 + yfdQ b2360 0.42 -1.6 2,472,410 - yfdQ b2360 0.43 -0.4 2,472,410 - yfdQ b2360 0.43 +0.8 2,472,417 - yfdQ b2360 0.44 +1.0 2,472,417 - yfdQ b2360 0.44 +0.6 2,472,451 - yfdQ b2360 0.48 -0.7 2,472,490 - yfdQ b2360 0.53 +0.0 2,472,492 - yfdQ b2360 0.53 +1.4 2,472,511 - yfdQ b2360 0.55 +2.4 2,472,577 - yfdQ b2360 0.63 -1.3 2,472,577 - yfdQ b2360 0.63 -1.3 2,472,578 - yfdQ b2360 0.64 +0.6 2,472,591 - yfdQ b2360 0.65 -1.2
Or see this region's nucleotide sequence