Strain Fitness in Escherichia coli BW25113 around b2226

Experiment: deuterated glucose in H2O

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatoB and yfaP are separated by 73 nucleotidesyfaP and yfaQ are separated by 4 nucleotidesyfaQ and yfaS are separated by 0 nucleotides b2224: atoB - acetyl-CoA acetyltransferase (NCBI), at 2,324,131 to 2,325,315 atoB b2225: yfaP - hypothetical protein (NCBI), at 2,325,389 to 2,326,165 yfaP b2226: yfaQ - hypothetical protein (NCBI), at 2,326,170 to 2,327,819 yfaQ b4500: yfaS - no description, at 2,327,820 to 2,332,424 yfaS Position (kb) 2326 2327 2328Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2325.215 kb on - strandat 2325.222 kb on - strandat 2325.224 kb on - strandat 2325.224 kb on - strandat 2325.226 kb on + strandat 2325.354 kb on + strandat 2325.354 kb on + strandat 2325.393 kb on - strandat 2325.393 kb on - strandat 2325.488 kb on + strand, within yfaPat 2325.526 kb on + strand, within yfaPat 2325.537 kb on - strand, within yfaPat 2325.555 kb on - strand, within yfaPat 2325.623 kb on - strand, within yfaPat 2325.623 kb on - strand, within yfaPat 2325.656 kb on - strand, within yfaPat 2325.756 kb on + strand, within yfaPat 2325.759 kb on - strand, within yfaPat 2325.970 kb on + strand, within yfaPat 2325.970 kb on + strand, within yfaPat 2326.112 kb on - strandat 2326.112 kb on - strandat 2326.209 kb on + strandat 2326.209 kb on + strandat 2326.237 kb on - strandat 2326.286 kb on - strandat 2326.338 kb on - strand, within yfaQat 2326.388 kb on - strand, within yfaQat 2326.388 kb on - strand, within yfaQat 2326.393 kb on - strand, within yfaQat 2326.394 kb on - strand, within yfaQat 2326.397 kb on - strand, within yfaQat 2326.490 kb on + strand, within yfaQat 2326.531 kb on + strand, within yfaQat 2326.531 kb on + strand, within yfaQat 2326.551 kb on + strand, within yfaQat 2326.584 kb on + strand, within yfaQat 2326.675 kb on + strand, within yfaQat 2326.690 kb on + strand, within yfaQat 2326.803 kb on - strand, within yfaQat 2326.803 kb on - strand, within yfaQat 2326.893 kb on + strandat 2326.954 kb on + strand, within yfaQat 2326.954 kb on + strand, within yfaQat 2326.954 kb on + strand, within yfaQat 2327.035 kb on + strand, within yfaQat 2327.053 kb on - strand, within yfaQat 2327.053 kb on - strand, within yfaQat 2327.135 kb on + strand, within yfaQat 2327.135 kb on + strand, within yfaQat 2327.178 kb on - strand, within yfaQat 2327.244 kb on + strand, within yfaQat 2327.256 kb on - strand, within yfaQat 2327.266 kb on - strand, within yfaQat 2327.294 kb on - strand, within yfaQat 2327.394 kb on + strand, within yfaQat 2327.394 kb on + strand, within yfaQat 2327.444 kb on - strand, within yfaQat 2327.450 kb on - strand, within yfaQat 2327.505 kb on - strand, within yfaQat 2327.505 kb on - strand, within yfaQat 2327.529 kb on + strand, within yfaQat 2327.552 kb on - strand, within yfaQat 2327.587 kb on - strand, within yfaQat 2327.649 kb on - strand, within yfaQat 2327.667 kb on + strandat 2327.798 kb on + strandat 2327.821 kb on + strandat 2327.878 kb on + strandat 2327.878 kb on + strandat 2327.889 kb on - strandat 2327.981 kb on + strandat 2327.986 kb on + strandat 2327.986 kb on + strandat 2327.986 kb on + strandat 2328.074 kb on + strandat 2328.155 kb on - strandat 2328.155 kb on - strandat 2328.215 kb on + strandat 2328.229 kb on - strandat 2328.229 kb on - strandat 2328.256 kb on - strandat 2328.314 kb on + strand, within yfaSat 2328.389 kb on - strand, within yfaSat 2328.389 kb on - strand, within yfaSat 2328.518 kb on + strand, within yfaSat 2328.538 kb on - strand, within yfaSat 2328.561 kb on + strand, within yfaSat 2328.561 kb on + strand, within yfaSat 2328.593 kb on + strand, within yfaSat 2328.631 kb on + strand, within yfaSat 2328.673 kb on + strand, within yfaS

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Per-strain Table

Position Strand Gene LocusTag Fraction deuterated glucose in H2O
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2,325,215 - +0.5
2,325,222 - -1.6
2,325,224 - +0.7
2,325,224 - +1.1
2,325,226 + +0.1
2,325,354 + +0.3
2,325,354 + -1.0
2,325,393 - -0.1
2,325,393 - -0.0
2,325,488 + yfaP b2225 0.13 +0.8
2,325,526 + yfaP b2225 0.18 +0.5
2,325,537 - yfaP b2225 0.19 +1.3
2,325,555 - yfaP b2225 0.21 +2.7
2,325,623 - yfaP b2225 0.30 +1.0
2,325,623 - yfaP b2225 0.30 +0.4
2,325,656 - yfaP b2225 0.34 +0.3
2,325,756 + yfaP b2225 0.47 +0.1
2,325,759 - yfaP b2225 0.48 +0.8
2,325,970 + yfaP b2225 0.75 +0.3
2,325,970 + yfaP b2225 0.75 +0.1
2,326,112 - +0.1
2,326,112 - +0.4
2,326,209 + +0.0
2,326,209 + +1.2
2,326,237 - +1.1
2,326,286 - -0.8
2,326,338 - yfaQ b2226 0.10 -0.2
2,326,388 - yfaQ b2226 0.13 +1.3
2,326,388 - yfaQ b2226 0.13 -0.5
2,326,393 - yfaQ b2226 0.14 -0.2
2,326,394 - yfaQ b2226 0.14 -0.3
2,326,397 - yfaQ b2226 0.14 -0.4
2,326,490 + yfaQ b2226 0.19 +0.1
2,326,531 + yfaQ b2226 0.22 +0.5
2,326,531 + yfaQ b2226 0.22 -1.5
2,326,551 + yfaQ b2226 0.23 -2.2
2,326,584 + yfaQ b2226 0.25 -3.2
2,326,675 + yfaQ b2226 0.31 -1.4
2,326,690 + yfaQ b2226 0.32 +0.1
2,326,803 - yfaQ b2226 0.38 -0.3
2,326,803 - yfaQ b2226 0.38 -1.8
2,326,893 + +2.3
2,326,954 + yfaQ b2226 0.48 -0.6
2,326,954 + yfaQ b2226 0.48 +0.9
2,326,954 + yfaQ b2226 0.48 -0.0
2,327,035 + yfaQ b2226 0.52 -0.0
2,327,053 - yfaQ b2226 0.54 -0.3
2,327,053 - yfaQ b2226 0.54 +0.1
2,327,135 + yfaQ b2226 0.58 -0.7
2,327,135 + yfaQ b2226 0.58 -0.5
2,327,178 - yfaQ b2226 0.61 -0.5
2,327,244 + yfaQ b2226 0.65 -1.0
2,327,256 - yfaQ b2226 0.66 +0.3
2,327,266 - yfaQ b2226 0.66 -0.1
2,327,294 - yfaQ b2226 0.68 +0.3
2,327,394 + yfaQ b2226 0.74 +1.7
2,327,394 + yfaQ b2226 0.74 +0.2
2,327,444 - yfaQ b2226 0.77 -0.7
2,327,450 - yfaQ b2226 0.78 -0.5
2,327,505 - yfaQ b2226 0.81 -0.9
2,327,505 - yfaQ b2226 0.81 +0.8
2,327,529 + yfaQ b2226 0.82 +1.0
2,327,552 - yfaQ b2226 0.84 -0.0
2,327,587 - yfaQ b2226 0.86 -1.0
2,327,649 - yfaQ b2226 0.90 -0.0
2,327,667 + +0.9
2,327,798 + +0.7
2,327,821 + +2.0
2,327,878 + -0.8
2,327,878 + -0.5
2,327,889 - -0.6
2,327,981 + -0.9
2,327,986 + -2.8
2,327,986 + -0.1
2,327,986 + -0.5
2,328,074 + +0.7
2,328,155 - -2.7
2,328,155 - +0.8
2,328,215 + -1.0
2,328,229 - +1.3
2,328,229 - -0.3
2,328,256 - -1.6
2,328,314 + yfaS b4500 0.11 +0.6
2,328,389 - yfaS b4500 0.12 +0.2
2,328,389 - yfaS b4500 0.12 +0.3
2,328,518 + yfaS b4500 0.15 -1.3
2,328,538 - yfaS b4500 0.16 +1.3
2,328,561 + yfaS b4500 0.16 -0.4
2,328,561 + yfaS b4500 0.16 +0.1
2,328,593 + yfaS b4500 0.17 -0.3
2,328,631 + yfaS b4500 0.18 -0.1
2,328,673 + yfaS b4500 0.19 +0.4

Or see this region's nucleotide sequence