Experiment: 3-aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3504 and Atu3505 are separated by 169 nucleotides Atu3505 and Atu3506 are separated by 156 nucleotides Atu3506 and Atu3507 are separated by 69 nucleotides
Atu3504: Atu3504 - sulfate ABC transporter substrate-binding protein, at 554,626 to 555,612
Atu3504
Atu3505: Atu3505 - 3-hydroxyisobutyryl-CoA hydrolase, at 555,782 to 556,834
Atu3505
Atu3506: Atu3506 - hypothetical protein, at 556,991 to 557,392
Atu3506
Atu3507: Atu3507 - hypothetical protein, at 557,462 to 558,241
Atu3507
Position (kb) 555
556
557 Strain fitness (log2 ratio) -2
-1
0
1
2 at 554.819 kb on + strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.827 kb on - strand, within Atu3504 at 554.913 kb on + strand, within Atu3504 at 554.931 kb on - strand, within Atu3504 at 554.933 kb on - strand, within Atu3504 at 554.990 kb on + strand, within Atu3504 at 555.028 kb on + strand, within Atu3504 at 555.034 kb on - strand, within Atu3504 at 555.060 kb on - strand, within Atu3504 at 555.131 kb on + strand, within Atu3504 at 555.163 kb on - strand, within Atu3504 at 555.176 kb on - strand, within Atu3504 at 555.239 kb on + strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.247 kb on - strand, within Atu3504 at 555.278 kb on + strand, within Atu3504 at 555.332 kb on + strand, within Atu3504 at 555.369 kb on + strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.377 kb on - strand, within Atu3504 at 555.442 kb on - strand, within Atu3504 at 555.466 kb on - strand, within Atu3504 at 555.492 kb on - strand, within Atu3504 at 555.547 kb on - strand at 555.571 kb on - strand at 555.638 kb on + strand at 555.788 kb on - strand at 555.788 kb on - strand at 555.795 kb on - strand at 555.840 kb on - strand at 555.899 kb on + strand, within Atu3505 at 555.904 kb on + strand, within Atu3505 at 556.070 kb on + strand, within Atu3505 at 556.217 kb on + strand, within Atu3505 at 556.239 kb on + strand, within Atu3505 at 556.253 kb on + strand, within Atu3505 at 556.259 kb on - strand, within Atu3505 at 556.522 kb on + strand, within Atu3505 at 556.526 kb on + strand, within Atu3505 at 556.671 kb on + strand, within Atu3505 at 556.673 kb on + strand, within Atu3505 at 556.681 kb on - strand, within Atu3505 at 556.712 kb on + strand, within Atu3505 at 556.720 kb on - strand, within Atu3505 at 556.722 kb on + strand, within Atu3505 at 556.722 kb on + strand, within Atu3505 at 556.834 kb on - strand at 556.901 kb on - strand at 556.912 kb on + strand at 556.920 kb on - strand at 557.140 kb on + strand, within Atu3506 at 557.170 kb on + strand, within Atu3506 at 557.221 kb on + strand, within Atu3506 at 557.221 kb on + strand, within Atu3506 at 557.254 kb on + strand, within Atu3506 at 557.254 kb on + strand, within Atu3506 at 557.354 kb on + strand at 557.362 kb on - strand at 557.453 kb on + strand at 557.485 kb on - strand at 557.498 kb on + strand at 557.501 kb on + strand at 557.509 kb on - strand at 557.554 kb on + strand, within Atu3507 at 557.636 kb on + strand, within Atu3507 at 557.644 kb on - strand, within Atu3507 at 557.681 kb on + strand, within Atu3507 at 557.831 kb on - strand, within Atu3507
Per-strain Table
Position Strand Gene LocusTag Fraction 3-aminobutyric (N) remove 554,819 + Atu3504 0.20 +0.0 554,827 - Atu3504 0.20 +0.0 554,827 - Atu3504 0.20 +0.1 554,913 + Atu3504 0.29 +0.4 554,931 - Atu3504 0.31 +0.4 554,933 - Atu3504 0.31 -0.2 554,990 + Atu3504 0.37 +0.0 555,028 + Atu3504 0.41 +0.0 555,034 - Atu3504 0.41 +0.6 555,060 - Atu3504 0.44 +0.0 555,131 + Atu3504 0.51 -0.4 555,163 - Atu3504 0.54 -0.4 555,176 - Atu3504 0.56 -0.9 555,239 + Atu3504 0.62 +2.2 555,247 - Atu3504 0.63 +1.2 555,247 - Atu3504 0.63 +0.7 555,278 + Atu3504 0.66 -0.2 555,332 + Atu3504 0.72 +0.2 555,369 + Atu3504 0.75 -0.1 555,377 - Atu3504 0.76 +0.2 555,377 - Atu3504 0.76 -1.0 555,377 - Atu3504 0.76 +1.5 555,377 - Atu3504 0.76 -0.2 555,377 - Atu3504 0.76 +0.1 555,442 - Atu3504 0.83 -0.2 555,466 - Atu3504 0.85 +0.0 555,492 - Atu3504 0.88 +0.2 555,547 - -0.3 555,571 - -0.3 555,638 + -0.2 555,788 - +0.3 555,788 - +0.1 555,795 - +0.1 555,840 - -0.3 555,899 + Atu3505 0.11 +0.4 555,904 + Atu3505 0.12 +0.1 556,070 + Atu3505 0.27 +0.2 556,217 + Atu3505 0.41 +0.4 556,239 + Atu3505 0.43 -1.0 556,253 + Atu3505 0.45 -0.2 556,259 - Atu3505 0.45 -0.3 556,522 + Atu3505 0.70 -1.1 556,526 + Atu3505 0.71 -0.4 556,671 + Atu3505 0.84 -0.6 556,673 + Atu3505 0.85 -0.2 556,681 - Atu3505 0.85 -1.1 556,712 + Atu3505 0.88 -0.3 556,720 - Atu3505 0.89 -0.5 556,722 + Atu3505 0.89 -0.4 556,722 + Atu3505 0.89 +0.1 556,834 - -0.4 556,901 - -0.5 556,912 + +0.0 556,920 - -0.5 557,140 + Atu3506 0.37 -0.3 557,170 + Atu3506 0.45 +0.8 557,221 + Atu3506 0.57 +0.2 557,221 + Atu3506 0.57 +0.8 557,254 + Atu3506 0.65 +0.2 557,254 + Atu3506 0.65 -0.1 557,354 + +0.6 557,362 - -0.3 557,453 + -0.4 557,485 - -0.8 557,498 + +0.5 557,501 + -0.1 557,509 - -2.3 557,554 + Atu3507 0.12 +0.3 557,636 + Atu3507 0.22 -0.6 557,644 - Atu3507 0.23 -0.2 557,681 + Atu3507 0.28 -0.6 557,831 - Atu3507 0.47 +0.0
Or see this region's nucleotide sequence