Strain Fitness in Agrobacterium fabrum C58 around Atu0348

Experiment: 3-aminobutyric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0347 and Atu0348 overlap by 1 nucleotidesAtu0348 and Atu0349 are separated by 103 nucleotides Atu0347: Atu0347 - virulence factor MviN, at 342,473 to 344,062 Atu0347 Atu0348: Atu0348 - hypothetical protein, at 344,062 to 344,466 Atu0348 Atu0349: Atu0349 - tryptophan-tRNA ligase, at 344,570 to 345,634 Atu0349 Position (kb) 344 345Strain fitness (log2 ratio) -1 0 1at 344.005 kb on + strandat 344.056 kb on + strandat 344.094 kb on + strandat 344.146 kb on + strand, within Atu0348at 344.241 kb on - strand, within Atu0348at 344.319 kb on - strand, within Atu0348at 344.394 kb on + strand, within Atu0348at 344.402 kb on - strand, within Atu0348at 344.402 kb on - strand, within Atu0348at 344.402 kb on - strand, within Atu0348at 344.455 kb on - strandat 344.470 kb on - strandat 344.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-aminobutyric (N)
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344,005 + +0.3
344,056 + +0.5
344,094 + -0.1
344,146 + Atu0348 0.21 +0.1
344,241 - Atu0348 0.44 +0.1
344,319 - Atu0348 0.63 -0.4
344,394 + Atu0348 0.82 -0.5
344,402 - Atu0348 0.84 -0.0
344,402 - Atu0348 0.84 +0.5
344,402 - Atu0348 0.84 -0.4
344,455 - +0.3
344,470 - +0.1
344,534 + -0.5

Or see this region's nucleotide sequence