Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04450 and PS417_04455 are separated by 191 nucleotides PS417_04455 and PS417_04460 are separated by 69 nucleotides PS417_04460 and PS417_04470 are separated by 718 nucleotides
PS417_04450: PS417_04450 - hypothetical protein, at 987,665 to 988,150
_04450
PS417_04455: PS417_04455 - aminopeptidase, at 988,342 to 988,629
_04455
PS417_04460: PS417_04460 - malate:quinone oxidoreductase, at 988,699 to 990,207
_04460
PS417_04470: PS417_04470 - hypothetical protein, at 990,926 to 991,159
_04470
Position (kb) 988
989
990
991 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 987.818 kb on - strand, within PS417_04450 at 987.818 kb on - strand, within PS417_04450 at 987.818 kb on - strand, within PS417_04450 at 987.989 kb on + strand, within PS417_04450 at 987.990 kb on - strand, within PS417_04450 at 987.998 kb on - strand, within PS417_04450 at 988.038 kb on - strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.076 kb on + strand, within PS417_04450 at 988.077 kb on - strand, within PS417_04450 at 988.077 kb on - strand, within PS417_04450 at 988.081 kb on - strand, within PS417_04450 at 988.095 kb on - strand, within PS417_04450 at 988.108 kb on + strand at 988.108 kb on + strand at 988.109 kb on - strand at 988.109 kb on - strand at 988.122 kb on + strand at 988.122 kb on + strand at 988.166 kb on - strand at 988.166 kb on - strand at 988.203 kb on + strand at 988.211 kb on - strand at 988.216 kb on + strand at 988.216 kb on + strand at 988.299 kb on + strand at 988.318 kb on - strand at 988.318 kb on - strand at 988.585 kb on - strand, within PS417_04455 at 988.632 kb on - strand at 988.706 kb on + strand at 988.706 kb on + strand at 988.707 kb on - strand at 990.370 kb on + strand at 990.408 kb on - strand at 990.523 kb on + strand at 990.524 kb on - strand at 990.538 kb on - strand at 990.538 kb on - strand at 990.716 kb on + strand at 990.804 kb on - strand at 990.852 kb on + strand at 990.854 kb on + strand at 990.855 kb on - strand at 990.855 kb on - strand at 990.855 kb on - strand at 990.871 kb on + strand at 990.912 kb on + strand at 991.188 kb on - strand at 991.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 987,818 - PS417_04450 0.31 +0.2 987,818 - PS417_04450 0.31 -0.9 987,818 - PS417_04450 0.31 +1.7 987,989 + PS417_04450 0.67 -0.4 987,990 - PS417_04450 0.67 -2.7 987,998 - PS417_04450 0.69 +0.4 988,038 - PS417_04450 0.77 -0.7 988,076 + PS417_04450 0.85 -0.5 988,076 + PS417_04450 0.85 +0.1 988,076 + PS417_04450 0.85 -1.1 988,076 + PS417_04450 0.85 -0.0 988,077 - PS417_04450 0.85 -0.2 988,077 - PS417_04450 0.85 -0.3 988,081 - PS417_04450 0.86 +0.5 988,095 - PS417_04450 0.88 -1.0 988,108 + +1.1 988,108 + -0.0 988,109 - +0.4 988,109 - +0.6 988,122 + -0.1 988,122 + -0.3 988,166 - -1.0 988,166 - -2.5 988,203 + -0.5 988,211 - +0.6 988,216 + -0.3 988,216 + +0.4 988,299 + +0.5 988,318 - -1.1 988,318 - -0.7 988,585 - PS417_04455 0.84 -0.3 988,632 - +0.5 988,706 + +0.4 988,706 + -0.5 988,707 - -1.1 990,370 + -0.9 990,408 - +1.4 990,523 + -1.9 990,524 - +0.0 990,538 - +0.2 990,538 - +0.3 990,716 + -3.2 990,804 - -1.2 990,852 + -2.7 990,854 + -1.9 990,855 - -0.5 990,855 - +0.4 990,855 - +0.2 990,871 + -2.4 990,912 + -3.8 991,188 - -0.9 991,188 - +0.6
Or see this region's nucleotide sequence