Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04195 and PS417_04200 are separated by 54 nucleotides PS417_04200 and PS417_04205 are separated by 99 nucleotides
PS417_04195: PS417_04195 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) <small>(from data)</small>, at 939,839 to 940,750
_04195
PS417_04200: PS417_04200 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) <small>(from data)</small>, at 940,805 to 942,250
_04200
PS417_04205: PS417_04205 - D-galacturonate transporter (MFS superfamily) <small>(from data)</small>, at 942,350 to 943,714
_04205
Position (kb) 940
941
942
943 Strain fitness (log2 ratio) -1
0
1
2 at 939.837 kb on + strand at 939.838 kb on - strand at 939.936 kb on - strand, within PS417_04195 at 940.179 kb on - strand, within PS417_04195 at 940.179 kb on - strand, within PS417_04195 at 940.374 kb on + strand, within PS417_04195 at 940.404 kb on - strand, within PS417_04195 at 940.404 kb on - strand, within PS417_04195 at 940.470 kb on - strand, within PS417_04195 at 940.517 kb on + strand, within PS417_04195 at 940.707 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.832 kb on + strand at 940.832 kb on + strand at 940.832 kb on + strand at 940.832 kb on + strand at 940.833 kb on - strand at 940.833 kb on - strand at 940.833 kb on - strand at 940.833 kb on - strand at 941.131 kb on + strand, within PS417_04200 at 941.178 kb on - strand, within PS417_04200 at 941.178 kb on - strand, within PS417_04200 at 941.208 kb on + strand, within PS417_04200 at 941.208 kb on + strand, within PS417_04200 at 941.209 kb on - strand, within PS417_04200 at 941.209 kb on - strand, within PS417_04200 at 941.817 kb on - strand, within PS417_04200 at 941.817 kb on - strand, within PS417_04200 at 941.817 kb on - strand, within PS417_04200 at 941.894 kb on + strand, within PS417_04200 at 941.894 kb on + strand, within PS417_04200 at 941.895 kb on - strand, within PS417_04200 at 941.895 kb on - strand, within PS417_04200 at 941.895 kb on - strand, within PS417_04200 at 941.895 kb on - strand, within PS417_04200 at 941.895 kb on - strand, within PS417_04200 at 941.938 kb on + strand, within PS417_04200 at 941.939 kb on - strand, within PS417_04200 at 942.068 kb on + strand, within PS417_04200 at 942.141 kb on - strand at 942.215 kb on + strand at 942.236 kb on + strand at 942.237 kb on - strand at 942.237 kb on - strand at 942.237 kb on - strand at 942.248 kb on + strand at 942.249 kb on - strand at 942.252 kb on - strand at 942.252 kb on - strand at 942.252 kb on - strand at 942.332 kb on + strand at 942.333 kb on - strand at 942.341 kb on + strand at 942.342 kb on - strand at 942.381 kb on - strand at 942.381 kb on - strand at 942.422 kb on + strand at 942.423 kb on - strand at 942.423 kb on - strand at 942.500 kb on + strand, within PS417_04205 at 942.527 kb on + strand, within PS417_04205 at 942.635 kb on + strand, within PS417_04205 at 942.636 kb on - strand, within PS417_04205 at 942.636 kb on - strand, within PS417_04205 at 942.791 kb on - strand, within PS417_04205 at 942.803 kb on + strand, within PS417_04205 at 942.848 kb on + strand, within PS417_04205 at 943.055 kb on + strand, within PS417_04205 at 943.055 kb on + strand, within PS417_04205 at 943.055 kb on + strand, within PS417_04205 at 943.056 kb on - strand, within PS417_04205 at 943.056 kb on - strand, within PS417_04205 at 943.098 kb on - strand, within PS417_04205 at 943.142 kb on - strand, within PS417_04205 at 943.157 kb on + strand, within PS417_04205
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 939,837 + +0.1 939,838 - +0.2 939,936 - PS417_04195 0.11 -0.2 940,179 - PS417_04195 0.37 -0.0 940,179 - PS417_04195 0.37 -0.7 940,374 + PS417_04195 0.59 -0.0 940,404 - PS417_04195 0.62 -0.6 940,404 - PS417_04195 0.62 -0.3 940,470 - PS417_04195 0.69 -0.8 940,517 + PS417_04195 0.74 -0.2 940,707 - +0.2 940,758 - +2.6 940,758 - -0.0 940,758 - +0.9 940,758 - +0.3 940,758 - -0.4 940,758 - -0.6 940,832 + -0.0 940,832 + -0.8 940,832 + +0.3 940,832 + -1.1 940,833 - -0.2 940,833 - -0.1 940,833 - +0.1 940,833 - +0.6 941,131 + PS417_04200 0.23 +0.4 941,178 - PS417_04200 0.26 +0.6 941,178 - PS417_04200 0.26 -0.5 941,208 + PS417_04200 0.28 +0.6 941,208 + PS417_04200 0.28 +0.2 941,209 - PS417_04200 0.28 -0.2 941,209 - PS417_04200 0.28 +0.2 941,817 - PS417_04200 0.70 -1.3 941,817 - PS417_04200 0.70 +0.1 941,817 - PS417_04200 0.70 +0.3 941,894 + PS417_04200 0.75 +0.4 941,894 + PS417_04200 0.75 +0.1 941,895 - PS417_04200 0.75 -0.0 941,895 - PS417_04200 0.75 -0.3 941,895 - PS417_04200 0.75 +0.2 941,895 - PS417_04200 0.75 +0.1 941,895 - PS417_04200 0.75 -0.2 941,938 + PS417_04200 0.78 -0.6 941,939 - PS417_04200 0.78 +0.4 942,068 + PS417_04200 0.87 -1.0 942,141 - -0.4 942,215 + -0.8 942,236 + -0.4 942,237 - -0.2 942,237 - +0.6 942,237 - +0.1 942,248 + -0.0 942,249 - +1.8 942,252 - +0.2 942,252 - +0.7 942,252 - -0.3 942,332 + -1.7 942,333 - -0.9 942,341 + +0.1 942,342 - +0.8 942,381 - -0.1 942,381 - -0.7 942,422 + +0.3 942,423 - -0.6 942,423 - +0.2 942,500 + PS417_04205 0.11 -1.5 942,527 + PS417_04205 0.13 -0.9 942,635 + PS417_04205 0.21 +0.3 942,636 - PS417_04205 0.21 -1.1 942,636 - PS417_04205 0.21 -0.4 942,791 - PS417_04205 0.32 +0.1 942,803 + PS417_04205 0.33 +0.6 942,848 + PS417_04205 0.36 -0.6 943,055 + PS417_04205 0.52 -0.1 943,055 + PS417_04205 0.52 +0.9 943,055 + PS417_04205 0.52 +0.5 943,056 - PS417_04205 0.52 +0.5 943,056 - PS417_04205 0.52 -1.2 943,098 - PS417_04205 0.55 +0.2 943,142 - PS417_04205 0.58 +0.9 943,157 + PS417_04205 0.59 -0.0
Or see this region's nucleotide sequence