Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24420 and PS417_24430 are separated by 206 nucleotides PS417_24430 and PS417_24435 overlap by 4 nucleotides PS417_24435 and PS417_24440 are separated by 133 nucleotides PS417_24440 and PS417_24445 are separated by 78 nucleotides
PS417_24420: PS417_24420 - RNA polymerase sigma70, at 5,303,182 to 5,303,703
_24420
PS417_24430: PS417_24430 - 3-dehydroquinate dehydratase, at 5,303,910 to 5,304,359
_24430
PS417_24435: PS417_24435 - shikimate dehydrogenase, at 5,304,356 to 5,305,204
_24435
PS417_24440: PS417_24440 - TetR family transcriptional regulator, at 5,305,338 to 5,305,979
_24440
PS417_24445: PS417_24445 - 4-hydroxyphenylpyruvate dioxygenase, at 5,306,058 to 5,307,959
_24445
Position (kb) 5304
5305
5306 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5303.529 kb on - strand, within PS417_24420 at 5303.743 kb on + strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.980 kb on - strand, within PS417_24430 at 5304.340 kb on + strand at 5304.341 kb on - strand at 5304.558 kb on + strand, within PS417_24435 at 5304.559 kb on + strand, within PS417_24435 at 5304.563 kb on + strand, within PS417_24435 at 5304.817 kb on + strand, within PS417_24435 at 5304.818 kb on - strand, within PS417_24435 at 5305.034 kb on + strand, within PS417_24435 at 5305.198 kb on + strand at 5305.198 kb on + strand at 5305.335 kb on + strand at 5305.394 kb on + strand at 5305.440 kb on - strand, within PS417_24440 at 5305.610 kb on - strand, within PS417_24440 at 5305.813 kb on + strand, within PS417_24440 at 5305.813 kb on + strand, within PS417_24440 at 5305.816 kb on + strand, within PS417_24440 at 5305.816 kb on + strand, within PS417_24440 at 5305.817 kb on - strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.820 kb on - strand, within PS417_24440 at 5305.820 kb on - strand, within PS417_24440 at 5305.918 kb on - strand at 5306.000 kb on + strand at 5306.060 kb on - strand at 5306.061 kb on + strand at 5306.062 kb on - strand at 5306.137 kb on + strand at 5306.146 kb on + strand at 5306.203 kb on + strand at 5306.203 kb on + strand at 5306.204 kb on - strand at 5306.204 kb on - strand at 5306.204 kb on - strand at 5306.204 kb on - strand at 5306.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 5,303,529 - PS417_24420 0.66 -0.0 5,303,743 + +1.0 5,303,892 - +0.6 5,303,892 - +1.4 5,303,892 - +0.2 5,303,892 - +0.4 5,303,892 - -0.3 5,303,980 - PS417_24430 0.16 +0.1 5,304,340 + +0.0 5,304,341 - +1.9 5,304,558 + PS417_24435 0.24 +0.1 5,304,559 + PS417_24435 0.24 -0.7 5,304,563 + PS417_24435 0.24 +0.1 5,304,817 + PS417_24435 0.54 +0.6 5,304,818 - PS417_24435 0.54 -0.2 5,305,034 + PS417_24435 0.80 -0.4 5,305,198 + -0.2 5,305,198 + +0.8 5,305,335 + -0.3 5,305,394 + +0.3 5,305,440 - PS417_24440 0.16 -0.6 5,305,610 - PS417_24440 0.42 -0.9 5,305,813 + PS417_24440 0.74 -1.0 5,305,813 + PS417_24440 0.74 -0.4 5,305,816 + PS417_24440 0.74 -2.4 5,305,816 + PS417_24440 0.74 -0.9 5,305,817 - PS417_24440 0.75 +0.5 5,305,819 + PS417_24440 0.75 +0.1 5,305,819 + PS417_24440 0.75 -0.6 5,305,819 + PS417_24440 0.75 +0.2 5,305,819 + PS417_24440 0.75 -0.5 5,305,819 + PS417_24440 0.75 +0.2 5,305,819 + PS417_24440 0.75 -0.5 5,305,819 + PS417_24440 0.75 -1.5 5,305,819 + PS417_24440 0.75 -0.8 5,305,819 + PS417_24440 0.75 -0.4 5,305,819 + PS417_24440 0.75 -0.7 5,305,819 + PS417_24440 0.75 -2.0 5,305,819 + PS417_24440 0.75 -0.3 5,305,820 - PS417_24440 0.75 +0.4 5,305,820 - PS417_24440 0.75 +0.3 5,305,918 - +0.2 5,306,000 + +0.4 5,306,060 - +0.0 5,306,061 + -0.8 5,306,062 - +0.8 5,306,137 + -0.3 5,306,146 + +0.0 5,306,203 + -1.3 5,306,203 + -0.3 5,306,204 - +0.7 5,306,204 - +0.8 5,306,204 - -1.4 5,306,204 - -0.2 5,306,204 - -0.2
Or see this region's nucleotide sequence