Experiment: octanoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02060 and PS417_02065 are separated by 33 nucleotides PS417_02065 and PS417_02070 overlap by 11 nucleotides PS417_02070 and PS417_02075 are separated by 29 nucleotides
PS417_02060: PS417_02060 - FAD-dependent oxidoreductase, at 461,182 to 462,429
_02060
PS417_02065: PS417_02065 - membrane protein, at 462,463 to 464,775
_02065
PS417_02070: PS417_02070 - membrane protein, at 464,765 to 465,427
_02070
PS417_02075: PS417_02075 - thioesterase, at 465,457 to 465,882
_02075
Position (kb)
462
463
464
465 Strain fitness (log2 ratio)
-2
-1
0
1 at 461.814 kb on + strand, within PS417_02060 at 461.815 kb on - strand, within PS417_02060 at 461.992 kb on + strand, within PS417_02060 at 462.226 kb on + strand, within PS417_02060 at 462.328 kb on + strand at 462.328 kb on + strand at 462.328 kb on + strand at 462.328 kb on + strand at 462.329 kb on - strand at 462.329 kb on - strand at 462.329 kb on - strand at 462.421 kb on + strand at 462.421 kb on + strand at 462.466 kb on + strand at 462.467 kb on - strand at 462.467 kb on - strand at 462.504 kb on + strand at 462.562 kb on - strand at 462.625 kb on + strand at 463.063 kb on + strand, within PS417_02065 at 463.063 kb on + strand, within PS417_02065 at 463.090 kb on - strand, within PS417_02065 at 463.710 kb on - strand, within PS417_02065 at 463.811 kb on + strand, within PS417_02065 at 463.812 kb on - strand, within PS417_02065 at 463.835 kb on - strand, within PS417_02065 at 463.879 kb on - strand, within PS417_02065 at 463.982 kb on - strand, within PS417_02065 at 463.982 kb on - strand, within PS417_02065 at 464.083 kb on + strand, within PS417_02065 at 464.084 kb on - strand, within PS417_02065 at 464.573 kb on - strand at 464.578 kb on + strand at 464.610 kb on + strand at 464.611 kb on - strand at 464.611 kb on - strand at 464.611 kb on - strand at 464.611 kb on - strand at 464.828 kb on - strand at 464.828 kb on - strand at 465.330 kb on - strand, within PS417_02070 at 465.476 kb on - strand at 465.596 kb on + strand, within PS417_02075 at 465.597 kb on - strand, within PS417_02075 at 465.597 kb on - strand, within PS417_02075 at 465.734 kb on + strand, within PS417_02075 at 465.734 kb on + strand, within PS417_02075 at 465.734 kb on + strand, within PS417_02075 at 465.735 kb on - strand, within PS417_02075 at 465.735 kb on - strand, within PS417_02075
Per-strain Table
Position Strand Gene LocusTag Fraction octanoate (C) remove 461,814 + PS417_02060 0.51 -0.9 461,815 - PS417_02060 0.51 -0.0 461,992 + PS417_02060 0.65 -0.2 462,226 + PS417_02060 0.84 -0.4 462,328 + -0.3 462,328 + -0.3 462,328 + -0.0 462,328 + +0.8 462,329 - +0.1 462,329 - -0.0 462,329 - +0.4 462,421 + -0.1 462,421 + +0.2 462,466 + -0.9 462,467 - -0.3 462,467 - -0.5 462,504 + +1.0 462,562 - -2.3 462,625 + -1.4 463,063 + PS417_02065 0.26 -0.9 463,063 + PS417_02065 0.26 -1.2 463,090 - PS417_02065 0.27 -0.6 463,710 - PS417_02065 0.54 -1.8 463,811 + PS417_02065 0.58 +0.2 463,812 - PS417_02065 0.58 -1.6 463,835 - PS417_02065 0.59 -2.0 463,879 - PS417_02065 0.61 -0.8 463,982 - PS417_02065 0.66 -1.3 463,982 - PS417_02065 0.66 +0.6 464,083 + PS417_02065 0.70 +0.4 464,084 - PS417_02065 0.70 -0.8 464,573 - -1.1 464,578 + +0.2 464,610 + +0.1 464,611 - -0.4 464,611 - -1.4 464,611 - -0.7 464,611 - -0.3 464,828 - -0.8 464,828 - -0.2 465,330 - PS417_02070 0.85 +0.4 465,476 - -2.0 465,596 + PS417_02075 0.33 +1.0 465,597 - PS417_02075 0.33 -1.3 465,597 - PS417_02075 0.33 -0.6 465,734 + PS417_02075 0.65 +0.3 465,734 + PS417_02075 0.65 +0.6 465,734 + PS417_02075 0.65 -0.5 465,735 - PS417_02075 0.65 -0.3 465,735 - PS417_02075 0.65 +0.9
Or see this region's nucleotide sequence