Strain Fitness in Pseudomonas simiae WCS417 around PS417_02065

Experiment: octanoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02060 and PS417_02065 are separated by 33 nucleotidesPS417_02065 and PS417_02070 overlap by 11 nucleotidesPS417_02070 and PS417_02075 are separated by 29 nucleotides PS417_02060: PS417_02060 - FAD-dependent oxidoreductase, at 461,182 to 462,429 _02060 PS417_02065: PS417_02065 - membrane protein, at 462,463 to 464,775 _02065 PS417_02070: PS417_02070 - membrane protein, at 464,765 to 465,427 _02070 PS417_02075: PS417_02075 - thioesterase, at 465,457 to 465,882 _02075 Position (kb) 462 463 464 465Strain fitness (log2 ratio) -2 -1 0 1at 461.814 kb on + strand, within PS417_02060at 461.815 kb on - strand, within PS417_02060at 461.992 kb on + strand, within PS417_02060at 462.226 kb on + strand, within PS417_02060at 462.328 kb on + strandat 462.328 kb on + strandat 462.328 kb on + strandat 462.328 kb on + strandat 462.329 kb on - strandat 462.329 kb on - strandat 462.329 kb on - strandat 462.421 kb on + strandat 462.421 kb on + strandat 462.466 kb on + strandat 462.467 kb on - strandat 462.467 kb on - strandat 462.504 kb on + strandat 462.562 kb on - strandat 462.625 kb on + strandat 463.063 kb on + strand, within PS417_02065at 463.063 kb on + strand, within PS417_02065at 463.090 kb on - strand, within PS417_02065at 463.710 kb on - strand, within PS417_02065at 463.811 kb on + strand, within PS417_02065at 463.812 kb on - strand, within PS417_02065at 463.835 kb on - strand, within PS417_02065at 463.879 kb on - strand, within PS417_02065at 463.982 kb on - strand, within PS417_02065at 463.982 kb on - strand, within PS417_02065at 464.083 kb on + strand, within PS417_02065at 464.084 kb on - strand, within PS417_02065at 464.573 kb on - strandat 464.578 kb on + strandat 464.610 kb on + strandat 464.611 kb on - strandat 464.611 kb on - strandat 464.611 kb on - strandat 464.611 kb on - strandat 464.828 kb on - strandat 464.828 kb on - strandat 465.330 kb on - strand, within PS417_02070at 465.476 kb on - strandat 465.596 kb on + strand, within PS417_02075at 465.597 kb on - strand, within PS417_02075at 465.597 kb on - strand, within PS417_02075at 465.734 kb on + strand, within PS417_02075at 465.734 kb on + strand, within PS417_02075at 465.734 kb on + strand, within PS417_02075at 465.735 kb on - strand, within PS417_02075at 465.735 kb on - strand, within PS417_02075

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Per-strain Table

Position Strand Gene LocusTag Fraction octanoate (C)
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461,814 + PS417_02060 0.51 -0.9
461,815 - PS417_02060 0.51 -0.0
461,992 + PS417_02060 0.65 -0.2
462,226 + PS417_02060 0.84 -0.4
462,328 + -0.3
462,328 + -0.3
462,328 + -0.0
462,328 + +0.8
462,329 - +0.1
462,329 - -0.0
462,329 - +0.4
462,421 + -0.1
462,421 + +0.2
462,466 + -0.9
462,467 - -0.3
462,467 - -0.5
462,504 + +1.0
462,562 - -2.3
462,625 + -1.4
463,063 + PS417_02065 0.26 -0.9
463,063 + PS417_02065 0.26 -1.2
463,090 - PS417_02065 0.27 -0.6
463,710 - PS417_02065 0.54 -1.8
463,811 + PS417_02065 0.58 +0.2
463,812 - PS417_02065 0.58 -1.6
463,835 - PS417_02065 0.59 -2.0
463,879 - PS417_02065 0.61 -0.8
463,982 - PS417_02065 0.66 -1.3
463,982 - PS417_02065 0.66 +0.6
464,083 + PS417_02065 0.70 +0.4
464,084 - PS417_02065 0.70 -0.8
464,573 - -1.1
464,578 + +0.2
464,610 + +0.1
464,611 - -0.4
464,611 - -1.4
464,611 - -0.7
464,611 - -0.3
464,828 - -0.8
464,828 - -0.2
465,330 - PS417_02070 0.85 +0.4
465,476 - -2.0
465,596 + PS417_02075 0.33 +1.0
465,597 - PS417_02075 0.33 -1.3
465,597 - PS417_02075 0.33 -0.6
465,734 + PS417_02075 0.65 +0.3
465,734 + PS417_02075 0.65 +0.6
465,734 + PS417_02075 0.65 -0.5
465,735 - PS417_02075 0.65 -0.3
465,735 - PS417_02075 0.65 +0.9

Or see this region's nucleotide sequence