Experiment: Cytidine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01870 and PS417_01875 are separated by 144 nucleotides PS417_01875 and PS417_01880 are separated by 105 nucleotides PS417_01880 and PS417_01885 are separated by 12 nucleotides PS417_01885 and PS417_01890 are separated by 78 nucleotides PS417_01890 and PS417_01895 are separated by 27 nucleotides
PS417_01870: PS417_01870 - ubiquinone biosynthesis methyltransferase UbiE, at 415,012 to 415,782
_01870
PS417_01875: PS417_01875 - polyhydroxyalkanoic acid system protein, at 415,927 to 416,202
_01875
PS417_01880: PS417_01880 - poly(3-hydroxyalkanoate) granule-associated protein PhaI, at 416,308 to 416,730
_01880
PS417_01885: PS417_01885 - poly(3-hydroxyalkanoate) granule-associated protein PhaF, at 416,743 to 417,726
_01885
PS417_01890: PS417_01890 - TetR family transcriptional regulator, at 417,805 to 418,425
_01890
PS417_01895: PS417_01895 - poly(R)-hydroxyalkanoic acid synthase, at 418,453 to 420,135
_01895
Position (kb) 416
417
418 Strain fitness (log2 ratio) -2
-1
0
1
2 at 415.783 kb on - strand at 415.783 kb on - strand at 415.817 kb on - strand at 415.831 kb on - strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.855 kb on + strand at 415.856 kb on - strand at 415.856 kb on - strand at 415.936 kb on - strand at 415.936 kb on - strand at 416.049 kb on + strand, within PS417_01875 at 416.087 kb on + strand, within PS417_01875 at 416.289 kb on - strand at 416.367 kb on + strand, within PS417_01880 at 416.368 kb on - strand, within PS417_01880 at 416.411 kb on - strand, within PS417_01880 at 416.547 kb on + strand, within PS417_01880 at 416.590 kb on - strand, within PS417_01880 at 416.705 kb on + strand at 416.705 kb on + strand at 416.706 kb on - strand at 416.706 kb on - strand at 416.706 kb on - strand at 416.721 kb on + strand at 416.728 kb on + strand at 416.728 kb on + strand at 416.760 kb on + strand at 416.869 kb on + strand, within PS417_01885 at 416.870 kb on - strand, within PS417_01885 at 416.870 kb on - strand, within PS417_01885 at 417.132 kb on + strand, within PS417_01885 at 417.621 kb on + strand, within PS417_01885 at 417.622 kb on - strand, within PS417_01885 at 417.806 kb on + strand at 417.807 kb on - strand at 417.824 kb on + strand at 417.825 kb on - strand at 417.868 kb on + strand, within PS417_01890 at 417.868 kb on + strand, within PS417_01890 at 417.868 kb on + strand, within PS417_01890 at 417.899 kb on + strand, within PS417_01890 at 417.900 kb on - strand, within PS417_01890 at 417.914 kb on - strand, within PS417_01890 at 418.152 kb on - strand, within PS417_01890 at 418.193 kb on + strand, within PS417_01890 at 418.194 kb on - strand, within PS417_01890 at 418.194 kb on - strand, within PS417_01890 at 418.277 kb on - strand, within PS417_01890 at 418.304 kb on + strand, within PS417_01890 at 418.304 kb on + strand, within PS417_01890 at 418.307 kb on + strand, within PS417_01890 at 418.436 kb on + strand at 418.436 kb on + strand at 418.437 kb on - strand at 418.437 kb on - strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.469 kb on + strand at 418.470 kb on - strand at 418.470 kb on - strand at 418.470 kb on - strand at 418.610 kb on + strand at 418.611 kb on - strand at 418.652 kb on + strand, within PS417_01895 at 418.652 kb on + strand, within PS417_01895 at 418.652 kb on + strand, within PS417_01895
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (C) remove 415,783 - -0.3 415,783 - -0.2 415,817 - +0.5 415,831 - -0.7 415,855 + +0.6 415,855 + -0.2 415,855 + +1.6 415,856 - -0.0 415,856 - +0.2 415,936 - -0.5 415,936 - +0.7 416,049 + PS417_01875 0.44 -2.0 416,087 + PS417_01875 0.58 -0.0 416,289 - -0.2 416,367 + PS417_01880 0.14 +0.1 416,368 - PS417_01880 0.14 -0.4 416,411 - PS417_01880 0.24 +0.9 416,547 + PS417_01880 0.57 -1.8 416,590 - PS417_01880 0.67 -0.6 416,705 + -0.3 416,705 + +0.1 416,706 - -0.5 416,706 - -0.7 416,706 - -0.2 416,721 + -0.1 416,728 + -2.1 416,728 + +0.2 416,760 + -1.1 416,869 + PS417_01885 0.13 +0.3 416,870 - PS417_01885 0.13 -0.1 416,870 - PS417_01885 0.13 -0.4 417,132 + PS417_01885 0.40 -0.7 417,621 + PS417_01885 0.89 -1.7 417,622 - PS417_01885 0.89 -1.2 417,806 + -0.4 417,807 - -0.4 417,824 + -0.5 417,825 - -0.5 417,868 + PS417_01890 0.10 +0.5 417,868 + PS417_01890 0.10 +0.3 417,868 + PS417_01890 0.10 -0.1 417,899 + PS417_01890 0.15 -1.2 417,900 - PS417_01890 0.15 -0.5 417,914 - PS417_01890 0.18 +0.1 418,152 - PS417_01890 0.56 -0.3 418,193 + PS417_01890 0.62 -0.9 418,194 - PS417_01890 0.63 +1.8 418,194 - PS417_01890 0.63 -0.1 418,277 - PS417_01890 0.76 +0.5 418,304 + PS417_01890 0.80 -0.6 418,304 + PS417_01890 0.80 -0.2 418,307 + PS417_01890 0.81 -0.1 418,436 + -1.2 418,436 + +0.9 418,437 - +1.2 418,437 - -0.3 418,469 + -0.4 418,469 + +0.4 418,469 + -0.4 418,469 + +0.0 418,469 + -0.2 418,469 + +0.4 418,469 + +0.6 418,469 + +0.2 418,469 + -2.4 418,470 - -0.5 418,470 - -0.1 418,470 - +0.7 418,610 + -0.0 418,611 - +0.3 418,652 + PS417_01895 0.12 -0.0 418,652 + PS417_01895 0.12 -0.2 418,652 + PS417_01895 0.12 -0.5
Or see this region's nucleotide sequence