Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18625

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18615 and CA264_18620 overlap by 11 nucleotidesCA264_18620 and CA264_18625 are separated by 9 nucleotidesCA264_18625 and CA264_18630 are separated by 301 nucleotides CA264_18615: CA264_18615 - hypothetical protein, at 4,329,364 to 4,329,897 _18615 CA264_18620: CA264_18620 - rod shape-determining protein MreC, at 4,329,887 to 4,330,753 _18620 CA264_18625: CA264_18625 - rod shape-determining protein, at 4,330,763 to 4,331,788 _18625 CA264_18630: CA264_18630 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 4,332,090 to 4,333,613 _18630 Position (kb) 4330 4331 4332Strain fitness (log2 ratio) -1 0 1at 4329.877 kb on + strandat 4329.878 kb on - strandat 4330.756 kb on - strandat 4330.756 kb on - strandat 4330.764 kb on + strandat 4331.797 kb on - strandat 4331.833 kb on + strandat 4331.833 kb on + strandat 4331.894 kb on + strandat 4331.895 kb on - strandat 4332.520 kb on - strand, within CA264_18630at 4332.542 kb on + strand, within CA264_18630at 4332.542 kb on + strand, within CA264_18630at 4332.607 kb on - strand, within CA264_18630at 4332.760 kb on + strand, within CA264_18630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
4,329,877 + -0.4
4,329,878 - -0.5
4,330,756 - -0.4
4,330,756 - +0.2
4,330,764 + -0.8
4,331,797 - -1.3
4,331,833 + -1.3
4,331,833 + -1.2
4,331,894 + -0.3
4,331,895 - -0.7
4,332,520 - CA264_18630 0.28 -0.5
4,332,542 + CA264_18630 0.30 -0.1
4,332,542 + CA264_18630 0.30 -0.5
4,332,607 - CA264_18630 0.34 -0.1
4,332,760 + CA264_18630 0.44 -0.9

Or see this region's nucleotide sequence