Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18235

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18225 and CA264_18230 are separated by 32 nucleotidesCA264_18230 and CA264_18235 are separated by 236 nucleotidesCA264_18235 and CA264_18240 are separated by 168 nucleotides CA264_18225: CA264_18225 - hypothetical protein, at 4,238,820 to 4,239,374 _18225 CA264_18230: CA264_18230 - hypothetical protein, at 4,239,407 to 4,240,099 _18230 CA264_18235: CA264_18235 - hypothetical protein, at 4,240,336 to 4,240,890 _18235 CA264_18240: CA264_18240 - hypothetical protein, at 4,241,059 to 4,242,474 _18240 Position (kb) 4240 4241Strain fitness (log2 ratio) -2 -1 0 1 2at 4239.373 kb on - strandat 4239.389 kb on + strandat 4239.408 kb on + strandat 4239.420 kb on + strandat 4239.420 kb on + strandat 4239.421 kb on - strandat 4239.421 kb on - strandat 4239.437 kb on + strandat 4239.482 kb on - strand, within CA264_18230at 4239.484 kb on - strand, within CA264_18230at 4239.562 kb on + strand, within CA264_18230at 4239.578 kb on - strand, within CA264_18230at 4239.578 kb on - strand, within CA264_18230at 4239.579 kb on + strand, within CA264_18230at 4239.579 kb on + strand, within CA264_18230at 4239.583 kb on - strand, within CA264_18230at 4239.586 kb on + strand, within CA264_18230at 4239.586 kb on + strand, within CA264_18230at 4239.586 kb on + strand, within CA264_18230at 4239.587 kb on - strand, within CA264_18230at 4239.642 kb on - strand, within CA264_18230at 4239.642 kb on - strand, within CA264_18230at 4239.652 kb on + strand, within CA264_18230at 4239.653 kb on - strand, within CA264_18230at 4239.669 kb on - strand, within CA264_18230at 4239.715 kb on + strand, within CA264_18230at 4239.763 kb on + strand, within CA264_18230at 4239.794 kb on - strand, within CA264_18230at 4239.802 kb on - strand, within CA264_18230at 4239.810 kb on + strand, within CA264_18230at 4239.874 kb on - strand, within CA264_18230at 4239.877 kb on + strand, within CA264_18230at 4239.878 kb on - strand, within CA264_18230at 4239.878 kb on - strand, within CA264_18230at 4239.878 kb on - strand, within CA264_18230at 4239.878 kb on - strand, within CA264_18230at 4239.878 kb on - strand, within CA264_18230at 4239.917 kb on - strand, within CA264_18230at 4239.917 kb on - strand, within CA264_18230at 4239.964 kb on + strand, within CA264_18230at 4239.965 kb on - strand, within CA264_18230at 4239.965 kb on - strand, within CA264_18230at 4239.972 kb on + strand, within CA264_18230at 4239.972 kb on + strand, within CA264_18230at 4239.994 kb on + strand, within CA264_18230at 4239.994 kb on + strand, within CA264_18230at 4239.995 kb on - strand, within CA264_18230at 4240.102 kb on - strandat 4240.242 kb on - strandat 4240.256 kb on - strandat 4240.288 kb on + strandat 4240.288 kb on + strandat 4240.288 kb on + strandat 4240.289 kb on - strandat 4240.289 kb on - strandat 4240.300 kb on + strandat 4240.313 kb on + strandat 4240.318 kb on + strandat 4240.431 kb on + strand, within CA264_18235at 4240.457 kb on + strand, within CA264_18235at 4240.457 kb on + strand, within CA264_18235at 4240.457 kb on + strand, within CA264_18235at 4240.486 kb on + strand, within CA264_18235at 4240.498 kb on + strand, within CA264_18235at 4240.498 kb on + strand, within CA264_18235at 4240.557 kb on + strand, within CA264_18235at 4240.559 kb on + strand, within CA264_18235at 4240.559 kb on + strand, within CA264_18235at 4240.560 kb on - strand, within CA264_18235at 4240.560 kb on - strand, within CA264_18235at 4240.565 kb on - strand, within CA264_18235at 4240.565 kb on - strand, within CA264_18235at 4240.612 kb on - strand, within CA264_18235at 4240.621 kb on + strand, within CA264_18235at 4240.966 kb on + strandat 4240.966 kb on + strandat 4241.048 kb on - strandat 4241.053 kb on + strandat 4241.061 kb on - strandat 4241.246 kb on + strand, within CA264_18240at 4241.246 kb on + strand, within CA264_18240at 4241.246 kb on + strand, within CA264_18240at 4241.246 kb on + strand, within CA264_18240at 4241.246 kb on + strand, within CA264_18240at 4241.246 kb on + strand, within CA264_18240at 4241.246 kb on + strand, within CA264_18240at 4241.247 kb on - strand, within CA264_18240at 4241.247 kb on - strand, within CA264_18240at 4241.247 kb on - strand, within CA264_18240at 4241.247 kb on - strand, within CA264_18240at 4241.257 kb on + strand, within CA264_18240at 4241.258 kb on - strand, within CA264_18240at 4241.258 kb on - strand, within CA264_18240at 4241.259 kb on + strand, within CA264_18240at 4241.259 kb on + strand, within CA264_18240at 4241.329 kb on + strand, within CA264_18240at 4241.367 kb on + strand, within CA264_18240at 4241.368 kb on - strand, within CA264_18240at 4241.392 kb on + strand, within CA264_18240at 4241.426 kb on - strand, within CA264_18240at 4241.429 kb on + strand, within CA264_18240at 4241.429 kb on + strand, within CA264_18240at 4241.429 kb on + strand, within CA264_18240at 4241.430 kb on - strand, within CA264_18240at 4241.669 kb on + strand, within CA264_18240at 4241.670 kb on - strand, within CA264_18240at 4241.670 kb on - strand, within CA264_18240at 4241.670 kb on - strand, within CA264_18240at 4241.670 kb on - strand, within CA264_18240at 4241.670 kb on - strand, within CA264_18240at 4241.713 kb on - strand, within CA264_18240at 4241.762 kb on + strand, within CA264_18240at 4241.762 kb on + strand, within CA264_18240at 4241.762 kb on + strand, within CA264_18240at 4241.762 kb on + strand, within CA264_18240at 4241.762 kb on + strand, within CA264_18240at 4241.762 kb on + strand, within CA264_18240at 4241.762 kb on + strand, within CA264_18240at 4241.764 kb on + strand, within CA264_18240at 4241.764 kb on + strand, within CA264_18240at 4241.765 kb on - strand, within CA264_18240at 4241.765 kb on - strand, within CA264_18240at 4241.765 kb on - strand, within CA264_18240at 4241.765 kb on - strand, within CA264_18240at 4241.765 kb on - strand, within CA264_18240at 4241.768 kb on - strand, within CA264_18240at 4241.768 kb on - strand, within CA264_18240at 4241.768 kb on - strand, within CA264_18240at 4241.770 kb on - strand, within CA264_18240at 4241.770 kb on - strand, within CA264_18240at 4241.817 kb on + strand, within CA264_18240at 4241.819 kb on + strand, within CA264_18240at 4241.820 kb on - strand, within CA264_18240at 4241.884 kb on + strand, within CA264_18240at 4241.884 kb on + strand, within CA264_18240

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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4,239,373 - +0.3
4,239,389 + -0.3
4,239,408 + +0.0
4,239,420 + +0.4
4,239,420 + +0.2
4,239,421 - +0.2
4,239,421 - -1.3
4,239,437 + -1.2
4,239,482 - CA264_18230 0.11 +0.2
4,239,484 - CA264_18230 0.11 -0.3
4,239,562 + CA264_18230 0.22 -0.5
4,239,578 - CA264_18230 0.25 -0.2
4,239,578 - CA264_18230 0.25 +0.7
4,239,579 + CA264_18230 0.25 -0.3
4,239,579 + CA264_18230 0.25 -1.1
4,239,583 - CA264_18230 0.25 +1.2
4,239,586 + CA264_18230 0.26 -0.2
4,239,586 + CA264_18230 0.26 +1.0
4,239,586 + CA264_18230 0.26 -0.1
4,239,587 - CA264_18230 0.26 +0.3
4,239,642 - CA264_18230 0.34 -0.2
4,239,642 - CA264_18230 0.34 -0.5
4,239,652 + CA264_18230 0.35 +0.2
4,239,653 - CA264_18230 0.35 -0.5
4,239,669 - CA264_18230 0.38 +0.7
4,239,715 + CA264_18230 0.44 -0.2
4,239,763 + CA264_18230 0.51 -0.3
4,239,794 - CA264_18230 0.56 +0.7
4,239,802 - CA264_18230 0.57 +2.3
4,239,810 + CA264_18230 0.58 +0.4
4,239,874 - CA264_18230 0.67 -0.4
4,239,877 + CA264_18230 0.68 +0.4
4,239,878 - CA264_18230 0.68 +0.4
4,239,878 - CA264_18230 0.68 +0.2
4,239,878 - CA264_18230 0.68 -0.4
4,239,878 - CA264_18230 0.68 +0.0
4,239,878 - CA264_18230 0.68 -0.8
4,239,917 - CA264_18230 0.74 +0.0
4,239,917 - CA264_18230 0.74 -0.3
4,239,964 + CA264_18230 0.80 -0.7
4,239,965 - CA264_18230 0.81 +0.1
4,239,965 - CA264_18230 0.81 -1.4
4,239,972 + CA264_18230 0.82 -0.3
4,239,972 + CA264_18230 0.82 -0.0
4,239,994 + CA264_18230 0.85 -0.0
4,239,994 + CA264_18230 0.85 -0.1
4,239,995 - CA264_18230 0.85 -0.1
4,240,102 - -1.3
4,240,242 - -0.4
4,240,256 - -0.2
4,240,288 + -0.0
4,240,288 + +1.3
4,240,288 + +0.0
4,240,289 - -0.2
4,240,289 - +0.0
4,240,300 + -0.4
4,240,313 + -0.9
4,240,318 + -0.7
4,240,431 + CA264_18235 0.17 -0.9
4,240,457 + CA264_18235 0.22 +0.6
4,240,457 + CA264_18235 0.22 -1.3
4,240,457 + CA264_18235 0.22 -0.0
4,240,486 + CA264_18235 0.27 +0.1
4,240,498 + CA264_18235 0.29 -0.4
4,240,498 + CA264_18235 0.29 -1.8
4,240,557 + CA264_18235 0.40 -0.9
4,240,559 + CA264_18235 0.40 +0.2
4,240,559 + CA264_18235 0.40 +1.2
4,240,560 - CA264_18235 0.40 -0.7
4,240,560 - CA264_18235 0.40 +0.3
4,240,565 - CA264_18235 0.41 -0.7
4,240,565 - CA264_18235 0.41 -0.1
4,240,612 - CA264_18235 0.50 +0.1
4,240,621 + CA264_18235 0.51 -0.1
4,240,966 + -0.0
4,240,966 + -0.5
4,241,048 - -0.3
4,241,053 + +0.0
4,241,061 - -0.8
4,241,246 + CA264_18240 0.13 -0.5
4,241,246 + CA264_18240 0.13 -1.7
4,241,246 + CA264_18240 0.13 +0.5
4,241,246 + CA264_18240 0.13 +0.8
4,241,246 + CA264_18240 0.13 +2.3
4,241,246 + CA264_18240 0.13 -0.4
4,241,246 + CA264_18240 0.13 -0.8
4,241,247 - CA264_18240 0.13 -0.4
4,241,247 - CA264_18240 0.13 -0.1
4,241,247 - CA264_18240 0.13 -0.3
4,241,247 - CA264_18240 0.13 -1.1
4,241,257 + CA264_18240 0.14 +1.9
4,241,258 - CA264_18240 0.14 +0.2
4,241,258 - CA264_18240 0.14 -0.2
4,241,259 + CA264_18240 0.14 +0.1
4,241,259 + CA264_18240 0.14 +0.2
4,241,329 + CA264_18240 0.19 +0.6
4,241,367 + CA264_18240 0.22 +0.7
4,241,368 - CA264_18240 0.22 -0.8
4,241,392 + CA264_18240 0.24 +0.4
4,241,426 - CA264_18240 0.26 -0.1
4,241,429 + CA264_18240 0.26 -0.5
4,241,429 + CA264_18240 0.26 -0.0
4,241,429 + CA264_18240 0.26 -0.4
4,241,430 - CA264_18240 0.26 +0.0
4,241,669 + CA264_18240 0.43 -0.4
4,241,670 - CA264_18240 0.43 -0.7
4,241,670 - CA264_18240 0.43 +0.5
4,241,670 - CA264_18240 0.43 -0.9
4,241,670 - CA264_18240 0.43 -0.1
4,241,670 - CA264_18240 0.43 +0.4
4,241,713 - CA264_18240 0.46 -0.4
4,241,762 + CA264_18240 0.50 +0.7
4,241,762 + CA264_18240 0.50 -0.3
4,241,762 + CA264_18240 0.50 +0.1
4,241,762 + CA264_18240 0.50 +0.5
4,241,762 + CA264_18240 0.50 +0.5
4,241,762 + CA264_18240 0.50 -0.4
4,241,762 + CA264_18240 0.50 -0.4
4,241,764 + CA264_18240 0.50 -0.2
4,241,764 + CA264_18240 0.50 +0.6
4,241,765 - CA264_18240 0.50 -0.1
4,241,765 - CA264_18240 0.50 -1.0
4,241,765 - CA264_18240 0.50 -0.0
4,241,765 - CA264_18240 0.50 -1.7
4,241,765 - CA264_18240 0.50 -0.0
4,241,768 - CA264_18240 0.50 -0.4
4,241,768 - CA264_18240 0.50 +1.3
4,241,768 - CA264_18240 0.50 -1.2
4,241,770 - CA264_18240 0.50 +0.7
4,241,770 - CA264_18240 0.50 -0.4
4,241,817 + CA264_18240 0.54 -0.6
4,241,819 + CA264_18240 0.54 +0.1
4,241,820 - CA264_18240 0.54 +1.2
4,241,884 + CA264_18240 0.58 -0.2
4,241,884 + CA264_18240 0.58 -0.5

Or see this region's nucleotide sequence