Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03770

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03760 and CA264_03765 are separated by 91 nucleotidesCA264_03765 and CA264_03770 are separated by 178 nucleotidesCA264_03770 and CA264_03775 are separated by 153 nucleotides CA264_03760: CA264_03760 - hypothetical protein, at 883,267 to 883,659 _03760 CA264_03765: CA264_03765 - tRNA-Glu, at 883,751 to 883,825 _03765 CA264_03770: CA264_03770 - type I glyceraldehyde-3-phosphate dehydrogenase, at 884,004 to 884,996 _03770 CA264_03775: CA264_03775 - hypothetical protein, at 885,150 to 886,034 _03775 Position (kb) 884 885Strain fitness (log2 ratio) -2 -1 0 1 2at 883.021 kb on - strandat 883.024 kb on + strandat 883.044 kb on + strandat 883.045 kb on - strandat 883.045 kb on - strandat 883.045 kb on - strandat 883.048 kb on + strandat 883.105 kb on - strandat 883.107 kb on - strandat 883.169 kb on + strandat 883.210 kb on + strandat 883.261 kb on + strandat 883.261 kb on + strandat 883.294 kb on + strandat 883.294 kb on + strandat 883.296 kb on + strandat 883.302 kb on + strandat 883.323 kb on + strand, within CA264_03760at 883.343 kb on + strand, within CA264_03760at 883.343 kb on + strand, within CA264_03760at 883.344 kb on - strand, within CA264_03760at 883.372 kb on + strand, within CA264_03760at 883.372 kb on + strand, within CA264_03760at 883.373 kb on - strand, within CA264_03760at 883.394 kb on - strand, within CA264_03760at 883.409 kb on + strand, within CA264_03760at 883.410 kb on - strand, within CA264_03760at 883.410 kb on - strand, within CA264_03760at 883.414 kb on + strand, within CA264_03760at 883.439 kb on - strand, within CA264_03760at 883.516 kb on - strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.517 kb on + strand, within CA264_03760at 883.518 kb on - strand, within CA264_03760at 883.564 kb on - strand, within CA264_03760at 883.589 kb on - strand, within CA264_03760at 883.658 kb on - strandat 883.665 kb on - strandat 883.672 kb on - strandat 883.672 kb on - strandat 883.888 kb on + strandat 883.912 kb on + strandat 883.951 kb on + strandat 883.952 kb on - strandat 883.956 kb on + strandat 883.956 kb on + strandat 883.957 kb on - strandat 885.068 kb on + strandat 885.087 kb on + strandat 885.104 kb on + strandat 885.104 kb on + strandat 885.104 kb on + strandat 885.105 kb on - strandat 885.106 kb on + strandat 885.106 kb on + strandat 885.107 kb on - strandat 885.107 kb on - strandat 885.107 kb on - strandat 885.140 kb on + strandat 885.167 kb on + strandat 885.196 kb on + strandat 885.309 kb on + strand, within CA264_03775at 885.370 kb on + strand, within CA264_03775at 885.681 kb on - strand, within CA264_03775at 885.752 kb on - strand, within CA264_03775at 885.752 kb on - strand, within CA264_03775at 885.752 kb on - strand, within CA264_03775at 885.755 kb on - strand, within CA264_03775at 885.755 kb on - strand, within CA264_03775at 885.755 kb on - strand, within CA264_03775at 885.756 kb on + strand, within CA264_03775at 885.756 kb on + strand, within CA264_03775at 885.757 kb on - strand, within CA264_03775at 885.757 kb on - strand, within CA264_03775at 885.757 kb on - strand, within CA264_03775at 885.757 kb on - strand, within CA264_03775at 885.765 kb on - strand, within CA264_03775at 885.829 kb on - strand, within CA264_03775at 885.843 kb on + strand, within CA264_03775at 885.843 kb on + strand, within CA264_03775at 885.843 kb on + strand, within CA264_03775at 885.844 kb on - strand, within CA264_03775at 885.844 kb on - strand, within CA264_03775at 885.844 kb on - strand, within CA264_03775at 885.845 kb on + strand, within CA264_03775at 885.845 kb on + strand, within CA264_03775at 885.962 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
883,021 - -0.5
883,024 + -0.4
883,044 + +0.6
883,045 - -1.3
883,045 - -1.6
883,045 - -1.0
883,048 + -0.1
883,105 - -0.6
883,107 - -1.2
883,169 + -0.0
883,210 + +0.1
883,261 + +0.6
883,261 + -0.9
883,294 + +0.1
883,294 + -0.9
883,296 + -0.1
883,302 + -0.3
883,323 + CA264_03760 0.14 -0.6
883,343 + CA264_03760 0.19 +0.3
883,343 + CA264_03760 0.19 -0.2
883,344 - CA264_03760 0.20 -0.9
883,372 + CA264_03760 0.27 -1.0
883,372 + CA264_03760 0.27 -0.9
883,373 - CA264_03760 0.27 -2.7
883,394 - CA264_03760 0.32 -0.8
883,409 + CA264_03760 0.36 -0.3
883,410 - CA264_03760 0.36 -2.1
883,410 - CA264_03760 0.36 +0.0
883,414 + CA264_03760 0.37 +0.2
883,439 - CA264_03760 0.44 -1.3
883,516 - CA264_03760 0.63 -1.9
883,517 + CA264_03760 0.64 -0.1
883,517 + CA264_03760 0.64 +0.6
883,517 + CA264_03760 0.64 -0.2
883,517 + CA264_03760 0.64 +0.5
883,518 - CA264_03760 0.64 -1.2
883,564 - CA264_03760 0.76 -1.4
883,589 - CA264_03760 0.82 -0.9
883,658 - -0.4
883,665 - +0.3
883,672 - -1.0
883,672 - -2.1
883,888 + +0.3
883,912 + -0.5
883,951 + +0.3
883,952 - +0.3
883,956 + -1.5
883,956 + -0.7
883,957 - +0.1
885,068 + +0.7
885,087 + -0.3
885,104 + -0.4
885,104 + -0.2
885,104 + -0.5
885,105 - -0.7
885,106 + -0.5
885,106 + -0.3
885,107 - -1.3
885,107 - +1.3
885,107 - +0.2
885,140 + +0.9
885,167 + +0.9
885,196 + +0.9
885,309 + CA264_03775 0.18 -0.5
885,370 + CA264_03775 0.25 -0.0
885,681 - CA264_03775 0.60 +0.7
885,752 - CA264_03775 0.68 +2.3
885,752 - CA264_03775 0.68 +0.0
885,752 - CA264_03775 0.68 +2.3
885,755 - CA264_03775 0.68 +1.5
885,755 - CA264_03775 0.68 +0.7
885,755 - CA264_03775 0.68 +0.6
885,756 + CA264_03775 0.68 -0.7
885,756 + CA264_03775 0.68 -0.3
885,757 - CA264_03775 0.69 +0.2
885,757 - CA264_03775 0.69 +0.0
885,757 - CA264_03775 0.69 +0.0
885,757 - CA264_03775 0.69 +1.3
885,765 - CA264_03775 0.69 +0.3
885,829 - CA264_03775 0.77 +0.2
885,843 + CA264_03775 0.78 +0.5
885,843 + CA264_03775 0.78 -0.2
885,843 + CA264_03775 0.78 +0.6
885,844 - CA264_03775 0.78 +0.0
885,844 - CA264_03775 0.78 -0.5
885,844 - CA264_03775 0.78 +0.7
885,845 + CA264_03775 0.79 -0.2
885,845 + CA264_03775 0.79 +1.0
885,962 - -0.9

Or see this region's nucleotide sequence