Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02620

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02610 and CA264_02615 are separated by 139 nucleotidesCA264_02615 and CA264_02620 overlap by 4 nucleotidesCA264_02620 and CA264_02625 are separated by 145 nucleotides CA264_02610: CA264_02610 - cation transporter, at 604,485 to 605,396 _02610 CA264_02615: CA264_02615 - DNA-binding response regulator, at 605,536 to 606,219 _02615 CA264_02620: CA264_02620 - two-component sensor histidine kinase, at 606,216 to 607,613 _02620 CA264_02625: CA264_02625 - hypothetical protein, at 607,759 to 609,330 _02625 Position (kb) 606 607 608Strain fitness (log2 ratio) -2 -1 0 1 2at 605.266 kb on - strand, within CA264_02610at 605.292 kb on + strand, within CA264_02610at 605.292 kb on + strand, within CA264_02610at 605.293 kb on - strand, within CA264_02610at 605.397 kb on - strandat 605.397 kb on - strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.424 kb on + strandat 605.425 kb on - strandat 605.425 kb on - strandat 605.429 kb on - strandat 605.468 kb on + strandat 605.469 kb on - strandat 605.469 kb on - strandat 605.469 kb on - strandat 605.469 kb on - strandat 605.517 kb on + strandat 605.517 kb on + strandat 605.517 kb on + strandat 605.518 kb on - strandat 605.608 kb on + strand, within CA264_02615at 605.608 kb on + strand, within CA264_02615at 605.609 kb on - strand, within CA264_02615at 605.609 kb on - strand, within CA264_02615at 605.626 kb on + strand, within CA264_02615at 605.627 kb on - strand, within CA264_02615at 605.645 kb on + strand, within CA264_02615at 605.645 kb on + strand, within CA264_02615at 605.828 kb on - strand, within CA264_02615at 605.858 kb on + strand, within CA264_02615at 605.858 kb on + strand, within CA264_02615at 605.859 kb on - strand, within CA264_02615at 606.016 kb on + strand, within CA264_02615at 606.059 kb on + strand, within CA264_02615at 606.059 kb on + strand, within CA264_02615at 606.060 kb on - strand, within CA264_02615at 606.140 kb on + strand, within CA264_02615at 606.172 kb on - strandat 606.191 kb on - strandat 606.236 kb on - strandat 606.295 kb on - strandat 606.302 kb on + strandat 606.303 kb on - strandat 606.303 kb on - strandat 606.313 kb on - strandat 606.371 kb on + strand, within CA264_02620at 606.391 kb on + strand, within CA264_02620at 606.391 kb on + strand, within CA264_02620at 606.391 kb on + strand, within CA264_02620at 606.392 kb on - strand, within CA264_02620at 606.463 kb on - strand, within CA264_02620at 606.463 kb on - strand, within CA264_02620at 606.463 kb on - strand, within CA264_02620at 606.463 kb on - strand, within CA264_02620at 606.516 kb on - strand, within CA264_02620at 606.620 kb on + strand, within CA264_02620at 606.649 kb on - strand, within CA264_02620at 607.343 kb on - strand, within CA264_02620at 607.611 kb on + strandat 607.611 kb on + strandat 607.623 kb on - strandat 607.623 kb on - strandat 607.645 kb on - strandat 607.655 kb on + strandat 607.702 kb on + strandat 607.744 kb on - strandat 607.787 kb on - strandat 607.914 kb on - strandat 607.991 kb on + strand, within CA264_02625at 607.992 kb on - strand, within CA264_02625at 608.103 kb on - strand, within CA264_02625at 608.104 kb on + strand, within CA264_02625at 608.105 kb on - strand, within CA264_02625at 608.360 kb on - strand, within CA264_02625at 608.372 kb on + strand, within CA264_02625at 608.431 kb on + strand, within CA264_02625at 608.431 kb on + strand, within CA264_02625at 608.432 kb on - strand, within CA264_02625at 608.468 kb on + strand, within CA264_02625at 608.554 kb on + strand, within CA264_02625at 608.554 kb on + strand, within CA264_02625at 608.554 kb on + strand, within CA264_02625at 608.561 kb on + strand, within CA264_02625at 608.561 kb on + strand, within CA264_02625at 608.562 kb on - strand, within CA264_02625at 608.568 kb on + strand, within CA264_02625

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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605,266 - CA264_02610 0.86 +0.1
605,292 + CA264_02610 0.88 +0.3
605,292 + CA264_02610 0.88 -0.2
605,293 - CA264_02610 0.89 -1.4
605,397 - -0.2
605,397 - -1.1
605,424 + +0.2
605,424 + +0.8
605,424 + +0.8
605,424 + -0.1
605,424 + +0.6
605,425 - -1.1
605,425 - -0.1
605,429 - +0.9
605,468 + -1.3
605,469 - -0.2
605,469 - -0.3
605,469 - -0.4
605,469 - -0.2
605,517 + -0.4
605,517 + +1.2
605,517 + -0.6
605,518 - -0.2
605,608 + CA264_02615 0.11 -1.3
605,608 + CA264_02615 0.11 -0.0
605,609 - CA264_02615 0.11 -0.8
605,609 - CA264_02615 0.11 +0.8
605,626 + CA264_02615 0.13 -0.5
605,627 - CA264_02615 0.13 -0.5
605,645 + CA264_02615 0.16 +0.1
605,645 + CA264_02615 0.16 +0.4
605,828 - CA264_02615 0.43 -0.5
605,858 + CA264_02615 0.47 +0.7
605,858 + CA264_02615 0.47 +0.0
605,859 - CA264_02615 0.47 -0.3
606,016 + CA264_02615 0.70 -0.4
606,059 + CA264_02615 0.76 -0.2
606,059 + CA264_02615 0.76 -0.3
606,060 - CA264_02615 0.77 -1.3
606,140 + CA264_02615 0.88 -0.2
606,172 - -0.5
606,191 - -0.1
606,236 - -1.3
606,295 - +0.0
606,302 + +0.4
606,303 - +0.4
606,303 - +1.1
606,313 - +0.2
606,371 + CA264_02620 0.11 -1.4
606,391 + CA264_02620 0.13 -0.7
606,391 + CA264_02620 0.13 -0.2
606,391 + CA264_02620 0.13 -0.5
606,392 - CA264_02620 0.13 -1.5
606,463 - CA264_02620 0.18 -1.2
606,463 - CA264_02620 0.18 +0.3
606,463 - CA264_02620 0.18 -0.0
606,463 - CA264_02620 0.18 -0.2
606,516 - CA264_02620 0.21 -2.0
606,620 + CA264_02620 0.29 -1.0
606,649 - CA264_02620 0.31 -0.7
607,343 - CA264_02620 0.81 -0.1
607,611 + -0.2
607,611 + +0.1
607,623 - +0.2
607,623 - -1.0
607,645 - -0.6
607,655 + +0.4
607,702 + -0.0
607,744 - -0.4
607,787 - +1.0
607,914 - +1.4
607,991 + CA264_02625 0.15 +0.6
607,992 - CA264_02625 0.15 +0.1
608,103 - CA264_02625 0.22 -0.1
608,104 + CA264_02625 0.22 +1.1
608,105 - CA264_02625 0.22 +0.4
608,360 - CA264_02625 0.38 -0.8
608,372 + CA264_02625 0.39 -1.7
608,431 + CA264_02625 0.43 +0.8
608,431 + CA264_02625 0.43 +0.2
608,432 - CA264_02625 0.43 -0.3
608,468 + CA264_02625 0.45 -1.0
608,554 + CA264_02625 0.51 -2.0
608,554 + CA264_02625 0.51 +0.1
608,554 + CA264_02625 0.51 -0.9
608,561 + CA264_02625 0.51 +0.2
608,561 + CA264_02625 0.51 +2.0
608,562 - CA264_02625 0.51 -0.6
608,568 + CA264_02625 0.51 +0.1

Or see this region's nucleotide sequence