Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01845 and CA264_01850 are separated by 194 nucleotides CA264_01850 and CA264_01855 are separated by 274 nucleotides CA264_01855 and CA264_01860 are separated by 14 nucleotides
CA264_01845: CA264_01845 - aldo/keto reductase, at 431,828 to 432,799
_01845
CA264_01850: CA264_01850 - hypothetical protein, at 432,994 to 433,482
_01850
CA264_01855: CA264_01855 - carbonic anhydrase, at 433,757 to 434,383
_01855
CA264_01860: CA264_01860 - hypothetical protein, at 434,398 to 435,303
_01860
Position (kb) 432
433
434 Strain fitness (log2 ratio) -1
0
1
2 at 432.093 kb on + strand, within CA264_01845 at 432.094 kb on - strand, within CA264_01845 at 432.181 kb on + strand, within CA264_01845 at 432.181 kb on + strand, within CA264_01845 at 432.182 kb on - strand, within CA264_01845 at 432.249 kb on + strand, within CA264_01845 at 432.347 kb on - strand, within CA264_01845 at 432.510 kb on - strand, within CA264_01845 at 432.514 kb on + strand, within CA264_01845 at 432.514 kb on + strand, within CA264_01845 at 432.539 kb on - strand, within CA264_01845 at 432.570 kb on + strand, within CA264_01845 at 432.571 kb on - strand, within CA264_01845 at 432.674 kb on + strand, within CA264_01845 at 432.680 kb on + strand, within CA264_01845 at 432.752 kb on + strand at 432.792 kb on + strand at 432.812 kb on + strand at 432.813 kb on - strand at 432.813 kb on - strand at 432.901 kb on + strand at 432.995 kb on + strand at 433.010 kb on - strand at 433.010 kb on - strand at 433.047 kb on + strand, within CA264_01850 at 433.068 kb on + strand, within CA264_01850 at 433.068 kb on + strand, within CA264_01850 at 433.068 kb on + strand, within CA264_01850 at 433.068 kb on + strand, within CA264_01850 at 433.068 kb on + strand, within CA264_01850 at 433.069 kb on - strand, within CA264_01850 at 433.141 kb on + strand, within CA264_01850 at 433.146 kb on + strand, within CA264_01850 at 433.147 kb on - strand, within CA264_01850 at 433.361 kb on + strand, within CA264_01850 at 433.475 kb on - strand at 433.478 kb on - strand at 433.478 kb on - strand at 433.478 kb on - strand at 433.482 kb on + strand at 433.483 kb on - strand at 433.485 kb on - strand at 433.485 kb on - strand at 433.485 kb on - strand at 433.530 kb on - strand at 433.530 kb on - strand at 433.620 kb on - strand at 433.623 kb on + strand at 433.633 kb on + strand at 433.634 kb on - strand at 433.675 kb on - strand at 433.689 kb on - strand at 433.759 kb on - strand at 433.768 kb on - strand at 433.797 kb on + strand at 433.798 kb on - strand at 433.813 kb on + strand at 433.886 kb on + strand, within CA264_01855 at 433.886 kb on + strand, within CA264_01855 at 433.886 kb on + strand, within CA264_01855 at 433.886 kb on + strand, within CA264_01855 at 433.886 kb on + strand, within CA264_01855 at 433.886 kb on + strand, within CA264_01855 at 434.033 kb on - strand, within CA264_01855 at 434.127 kb on - strand, within CA264_01855 at 434.219 kb on + strand, within CA264_01855 at 434.371 kb on + strand at 434.386 kb on + strand at 434.391 kb on + strand at 434.391 kb on + strand at 434.391 kb on + strand at 434.399 kb on + strand at 434.399 kb on + strand at 434.399 kb on + strand at 434.399 kb on + strand at 434.403 kb on + strand at 434.403 kb on + strand at 434.404 kb on - strand at 434.404 kb on - strand at 434.408 kb on + strand at 434.408 kb on + strand at 434.408 kb on + strand at 434.409 kb on - strand at 434.409 kb on - strand at 434.409 kb on - strand at 434.409 kb on - strand at 434.411 kb on + strand at 434.412 kb on - strand at 434.464 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 432,093 + CA264_01845 0.27 -1.4 432,094 - CA264_01845 0.27 -0.5 432,181 + CA264_01845 0.36 -0.5 432,181 + CA264_01845 0.36 -0.5 432,182 - CA264_01845 0.36 -0.8 432,249 + CA264_01845 0.43 -0.3 432,347 - CA264_01845 0.53 +1.3 432,510 - CA264_01845 0.70 +0.4 432,514 + CA264_01845 0.71 -1.5 432,514 + CA264_01845 0.71 -0.5 432,539 - CA264_01845 0.73 -1.1 432,570 + CA264_01845 0.76 -0.4 432,571 - CA264_01845 0.76 +0.3 432,674 + CA264_01845 0.87 +0.0 432,680 + CA264_01845 0.88 +0.8 432,752 + +1.3 432,792 + -0.1 432,812 + +0.4 432,813 - -0.5 432,813 - -0.5 432,901 + +0.4 432,995 + -0.7 433,010 - -0.7 433,010 - -1.4 433,047 + CA264_01850 0.11 -1.2 433,068 + CA264_01850 0.15 +0.5 433,068 + CA264_01850 0.15 +0.0 433,068 + CA264_01850 0.15 +0.5 433,068 + CA264_01850 0.15 +0.2 433,068 + CA264_01850 0.15 -1.3 433,069 - CA264_01850 0.15 -0.9 433,141 + CA264_01850 0.30 -1.3 433,146 + CA264_01850 0.31 -0.1 433,147 - CA264_01850 0.31 -0.5 433,361 + CA264_01850 0.75 +0.0 433,475 - +0.9 433,478 - -0.0 433,478 - -0.6 433,478 - +0.1 433,482 + +0.2 433,483 - +0.4 433,485 - +0.0 433,485 - +0.5 433,485 - +0.5 433,530 - -0.4 433,530 - -0.7 433,620 - +0.3 433,623 + +0.8 433,633 + -0.2 433,634 - -0.1 433,675 - -1.4 433,689 - -0.4 433,759 - -1.4 433,768 - -0.6 433,797 + +0.5 433,798 - +0.2 433,813 + +1.5 433,886 + CA264_01855 0.21 -0.9 433,886 + CA264_01855 0.21 -0.4 433,886 + CA264_01855 0.21 +0.7 433,886 + CA264_01855 0.21 +0.2 433,886 + CA264_01855 0.21 +0.3 433,886 + CA264_01855 0.21 +0.0 434,033 - CA264_01855 0.44 -0.6 434,127 - CA264_01855 0.59 +2.5 434,219 + CA264_01855 0.74 -1.1 434,371 + -0.3 434,386 + -0.3 434,391 + -1.1 434,391 + +1.3 434,391 + -1.0 434,399 + -0.7 434,399 + +0.2 434,399 + -0.2 434,399 + -1.1 434,403 + +0.5 434,403 + +0.5 434,404 - +0.4 434,404 - -0.9 434,408 + +1.5 434,408 + -0.3 434,408 + +0.4 434,409 - -1.7 434,409 - -0.3 434,409 - -0.2 434,409 - -0.1 434,411 + -0.8 434,412 - -0.4 434,464 - -0.4
Or see this region's nucleotide sequence