Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01630 and CA264_01635 are separated by 335 nucleotides CA264_01635 and CA264_01640 are separated by 253 nucleotides
CA264_01630: CA264_01630 - TonB dependent receptor, at 382,101 to 384,557
_01630
CA264_01635: CA264_01635 - nicotinamidase, at 384,893 to 385,504
_01635
CA264_01640: CA264_01640 - DEAD/DEAH box helicase, at 385,758 to 387,176
_01640
Position (kb) 384
385
386 Strain fitness (log2 ratio) -1
0
1
2 at 383.905 kb on + strand, within CA264_01630 at 383.942 kb on + strand, within CA264_01630 at 384.022 kb on - strand, within CA264_01630 at 384.026 kb on + strand, within CA264_01630 at 384.026 kb on + strand, within CA264_01630 at 384.026 kb on + strand, within CA264_01630 at 384.027 kb on - strand, within CA264_01630 at 384.145 kb on + strand, within CA264_01630 at 384.234 kb on + strand, within CA264_01630 at 384.234 kb on + strand, within CA264_01630 at 384.234 kb on + strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.301 kb on + strand, within CA264_01630 at 384.302 kb on - strand, within CA264_01630 at 384.310 kb on + strand, within CA264_01630 at 384.311 kb on - strand, within CA264_01630 at 384.314 kb on + strand at 384.327 kb on - strand at 384.328 kb on + strand at 384.329 kb on - strand at 384.356 kb on + strand at 384.357 kb on - strand at 384.420 kb on + strand at 384.421 kb on - strand at 384.433 kb on + strand at 384.434 kb on - strand at 384.434 kb on - strand at 384.434 kb on - strand at 384.520 kb on - strand at 384.561 kb on + strand at 384.561 kb on + strand at 384.562 kb on - strand at 384.562 kb on - strand at 384.562 kb on - strand at 384.563 kb on + strand at 384.563 kb on + strand at 384.563 kb on + strand at 384.563 kb on + strand at 384.564 kb on - strand at 384.631 kb on - strand at 384.645 kb on - strand at 384.696 kb on - strand at 384.714 kb on + strand at 384.714 kb on + strand at 384.784 kb on + strand at 384.796 kb on + strand at 384.815 kb on - strand at 384.872 kb on - strand at 384.872 kb on - strand at 384.873 kb on + strand at 384.873 kb on + strand at 384.874 kb on - strand at 384.907 kb on + strand at 384.942 kb on - strand at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.056 kb on + strand, within CA264_01635 at 385.099 kb on + strand, within CA264_01635 at 385.100 kb on - strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.162 kb on - strand, within CA264_01635 at 385.170 kb on - strand, within CA264_01635 at 385.301 kb on + strand, within CA264_01635 at 385.302 kb on - strand, within CA264_01635 at 385.478 kb on + strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.484 kb on + strand at 385.487 kb on + strand at 385.493 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.508 kb on - strand at 385.508 kb on - strand at 385.514 kb on + strand at 385.517 kb on + strand at 385.517 kb on + strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.524 kb on - strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.545 kb on + strand at 385.545 kb on + strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.547 kb on + strand at 385.548 kb on - strand at 385.692 kb on + strand at 385.692 kb on + strand at 385.693 kb on - strand at 385.760 kb on - strand at 385.814 kb on + strand at 385.814 kb on + strand at 386.201 kb on + strand, within CA264_01640 at 386.255 kb on - strand, within CA264_01640 at 386.255 kb on - strand, within CA264_01640 at 386.486 kb on + strand, within CA264_01640 at 386.486 kb on + strand, within CA264_01640 at 386.487 kb on - strand, within CA264_01640 at 386.487 kb on - strand, within CA264_01640
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 383,905 + CA264_01630 0.73 -1.0 383,942 + CA264_01630 0.75 +0.0 384,022 - CA264_01630 0.78 +0.0 384,026 + CA264_01630 0.78 -0.6 384,026 + CA264_01630 0.78 -1.0 384,026 + CA264_01630 0.78 -0.0 384,027 - CA264_01630 0.78 +0.1 384,145 + CA264_01630 0.83 -0.7 384,234 + CA264_01630 0.87 +0.1 384,234 + CA264_01630 0.87 -0.3 384,234 + CA264_01630 0.87 -0.5 384,235 - CA264_01630 0.87 +1.8 384,235 - CA264_01630 0.87 +1.3 384,235 - CA264_01630 0.87 +0.7 384,235 - CA264_01630 0.87 +1.0 384,235 - CA264_01630 0.87 -1.3 384,235 - CA264_01630 0.87 -0.0 384,301 + CA264_01630 0.90 +0.1 384,302 - CA264_01630 0.90 +0.2 384,310 + CA264_01630 0.90 -0.4 384,311 - CA264_01630 0.90 +0.8 384,314 + +0.2 384,327 - -0.4 384,328 + +0.2 384,329 - -1.1 384,356 + +0.4 384,357 - +0.0 384,420 + -0.0 384,421 - -0.2 384,433 + -0.5 384,434 - +0.5 384,434 - +0.3 384,434 - +0.1 384,520 - -0.2 384,561 + -1.2 384,561 + +0.2 384,562 - -0.6 384,562 - +2.5 384,562 - -1.1 384,563 + +0.2 384,563 + +0.8 384,563 + -0.0 384,563 + -0.3 384,564 - +0.0 384,631 - +0.0 384,645 - -0.2 384,696 - -0.0 384,714 + -0.6 384,714 + -0.0 384,784 + -0.8 384,796 + -0.2 384,815 - +0.5 384,872 - +0.4 384,872 - +0.1 384,873 + +1.0 384,873 + -0.3 384,874 - -0.1 384,907 + +0.1 384,942 - -0.1 385,000 + CA264_01635 0.17 -1.3 385,000 + CA264_01635 0.17 +0.7 385,000 + CA264_01635 0.17 +0.3 385,006 - CA264_01635 0.18 -0.1 385,006 - CA264_01635 0.18 -1.1 385,056 + CA264_01635 0.27 -0.4 385,099 + CA264_01635 0.34 +0.1 385,100 - CA264_01635 0.34 -0.1 385,161 + CA264_01635 0.44 -0.1 385,161 + CA264_01635 0.44 +0.5 385,162 - CA264_01635 0.44 -0.3 385,170 - CA264_01635 0.45 +1.1 385,301 + CA264_01635 0.67 -0.5 385,302 - CA264_01635 0.67 +0.1 385,478 + +0.8 385,479 - +1.6 385,479 - -0.3 385,479 - -0.4 385,479 - -1.1 385,479 - -0.0 385,479 - -0.4 385,484 + +0.9 385,487 + -0.6 385,493 + -0.3 385,504 + +2.5 385,504 + +0.4 385,504 + +0.4 385,504 + -0.1 385,505 - -0.0 385,505 - -0.3 385,505 - +0.6 385,508 - -0.4 385,508 - +0.2 385,514 + -0.4 385,517 + +1.0 385,517 + -0.5 385,518 - -0.4 385,518 - +0.0 385,518 - -0.7 385,524 - +0.6 385,543 + -1.3 385,543 + +1.6 385,543 + -0.4 385,545 + +1.4 385,545 + -0.3 385,546 - +0.0 385,546 - +0.4 385,546 - -0.3 385,546 - -0.3 385,546 - -1.1 385,547 + -0.5 385,548 - +0.5 385,692 + -0.9 385,692 + +1.5 385,693 - +0.2 385,760 - +0.3 385,814 + -0.8 385,814 + -0.2 386,201 + CA264_01640 0.31 -0.8 386,255 - CA264_01640 0.35 -1.2 386,255 - CA264_01640 0.35 +1.2 386,486 + CA264_01640 0.51 -0.7 386,486 + CA264_01640 0.51 +0.3 386,487 - CA264_01640 0.51 -0.8 386,487 - CA264_01640 0.51 -0.5
Or see this region's nucleotide sequence