Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01580 and CA264_01585 are separated by 125 nucleotides CA264_01585 and CA264_01590 overlap by 1 nucleotides CA264_01590 and CA264_01595 are separated by 127 nucleotides CA264_01595 and CA264_01600 are separated by 62 nucleotides
CA264_01580: CA264_01580 - D,D-heptose 1,7-bisphosphate phosphatase, at 373,154 to 373,675
_01580
CA264_01585: CA264_01585 - hypothetical protein, at 373,801 to 374,118
_01585
CA264_01590: CA264_01590 - hypothetical protein, at 374,118 to 374,561
_01590
CA264_01595: CA264_01595 - hypothetical protein, at 374,689 to 374,883
_01595
CA264_01600: CA264_01600 - arginine decarboxylase, at 374,946 to 376,340
_01600
Position (kb) 374
375 Strain fitness (log2 ratio) -1
0
1
2 at 373.141 kb on - strand at 373.217 kb on + strand, within CA264_01580 at 373.217 kb on + strand, within CA264_01580 at 373.219 kb on + strand, within CA264_01580 at 373.502 kb on - strand, within CA264_01580 at 373.654 kb on + strand at 373.655 kb on - strand at 373.655 kb on - strand at 373.657 kb on - strand at 373.682 kb on + strand at 373.710 kb on + strand at 373.710 kb on + strand at 373.710 kb on + strand at 373.711 kb on - strand at 373.711 kb on - strand at 373.734 kb on - strand at 373.734 kb on - strand at 373.738 kb on - strand at 373.745 kb on - strand at 373.781 kb on + strand at 373.792 kb on + strand at 373.851 kb on + strand, within CA264_01585 at 373.888 kb on - strand, within CA264_01585 at 373.907 kb on + strand, within CA264_01585 at 373.949 kb on + strand, within CA264_01585 at 374.010 kb on - strand, within CA264_01585 at 374.076 kb on + strand, within CA264_01585 at 374.076 kb on + strand, within CA264_01585 at 374.076 kb on + strand, within CA264_01585 at 374.077 kb on - strand, within CA264_01585 at 374.111 kb on + strand at 374.111 kb on + strand at 374.112 kb on - strand at 374.117 kb on - strand at 374.173 kb on + strand, within CA264_01590 at 374.174 kb on - strand, within CA264_01590 at 374.293 kb on + strand, within CA264_01590 at 374.424 kb on + strand, within CA264_01590 at 374.424 kb on + strand, within CA264_01590 at 374.424 kb on + strand, within CA264_01590 at 374.450 kb on - strand, within CA264_01590 at 374.462 kb on + strand, within CA264_01590 at 374.463 kb on - strand, within CA264_01590 at 374.463 kb on - strand, within CA264_01590 at 374.463 kb on - strand, within CA264_01590 at 374.467 kb on - strand, within CA264_01590 at 374.499 kb on - strand, within CA264_01590 at 374.499 kb on - strand, within CA264_01590 at 374.503 kb on - strand, within CA264_01590 at 374.506 kb on - strand, within CA264_01590 at 374.506 kb on - strand, within CA264_01590 at 374.533 kb on - strand at 374.538 kb on + strand at 374.661 kb on + strand at 374.665 kb on + strand at 374.665 kb on + strand at 374.665 kb on + strand at 374.665 kb on + strand at 374.728 kb on - strand, within CA264_01595 at 374.728 kb on - strand, within CA264_01595 at 374.772 kb on - strand, within CA264_01595 at 374.777 kb on + strand, within CA264_01595 at 374.825 kb on - strand, within CA264_01595 at 374.857 kb on + strand, within CA264_01595 at 374.858 kb on - strand, within CA264_01595 at 374.858 kb on - strand, within CA264_01595 at 374.858 kb on - strand, within CA264_01595 at 374.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 373,141 - +0.3 373,217 + CA264_01580 0.12 +0.3 373,217 + CA264_01580 0.12 -1.1 373,219 + CA264_01580 0.12 -1.7 373,502 - CA264_01580 0.67 -1.3 373,654 + +0.6 373,655 - -0.3 373,655 - -0.9 373,657 - +0.2 373,682 + +0.1 373,710 + -0.3 373,710 + +0.1 373,710 + -0.6 373,711 - +0.5 373,711 - -0.9 373,734 - +0.2 373,734 - -1.2 373,738 - +0.3 373,745 - +0.3 373,781 + +0.0 373,792 + +0.0 373,851 + CA264_01585 0.16 -0.5 373,888 - CA264_01585 0.27 -0.8 373,907 + CA264_01585 0.33 -0.2 373,949 + CA264_01585 0.47 +0.0 374,010 - CA264_01585 0.66 -0.1 374,076 + CA264_01585 0.86 +0.3 374,076 + CA264_01585 0.86 +0.1 374,076 + CA264_01585 0.86 -0.7 374,077 - CA264_01585 0.87 +0.6 374,111 + -0.6 374,111 + +0.1 374,112 - +0.6 374,117 - -0.8 374,173 + CA264_01590 0.12 -0.1 374,174 - CA264_01590 0.13 -0.7 374,293 + CA264_01590 0.39 -0.3 374,424 + CA264_01590 0.69 -0.7 374,424 + CA264_01590 0.69 +0.7 374,424 + CA264_01590 0.69 +0.2 374,450 - CA264_01590 0.75 -0.6 374,462 + CA264_01590 0.77 -0.4 374,463 - CA264_01590 0.78 -0.2 374,463 - CA264_01590 0.78 +1.2 374,463 - CA264_01590 0.78 -0.5 374,467 - CA264_01590 0.79 +0.1 374,499 - CA264_01590 0.86 -0.8 374,499 - CA264_01590 0.86 -0.6 374,503 - CA264_01590 0.87 -0.2 374,506 - CA264_01590 0.87 -0.8 374,506 - CA264_01590 0.87 -0.4 374,533 - +0.9 374,538 + -0.3 374,661 + +1.1 374,665 + +1.1 374,665 + +1.9 374,665 + -0.0 374,665 + +1.3 374,728 - CA264_01595 0.20 -0.8 374,728 - CA264_01595 0.20 +1.0 374,772 - CA264_01595 0.43 +0.4 374,777 + CA264_01595 0.45 -0.1 374,825 - CA264_01595 0.70 +0.5 374,857 + CA264_01595 0.86 -0.2 374,858 - CA264_01595 0.87 +0.0 374,858 - CA264_01595 0.87 -0.8 374,858 - CA264_01595 0.87 +0.2 374,896 - -0.1
Or see this region's nucleotide sequence