Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01105

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01095 and CA264_01100 are separated by 244 nucleotidesCA264_01100 and CA264_01105 are separated by 18 nucleotidesCA264_01105 and CA264_01110 are separated by 228 nucleotides CA264_01095: CA264_01095 - S9 family peptidase, at 239,599 to 241,761 _01095 CA264_01100: CA264_01100 - Clp protease ClpS, at 242,006 to 242,293 _01100 CA264_01105: CA264_01105 - recombination protein RecR, at 242,312 to 242,920 _01105 CA264_01110: CA264_01110 - hypothetical protein, at 243,149 to 245,215 _01110 Position (kb) 242 243Strain fitness (log2 ratio) -2 -1 0 1 2at 241.326 kb on + strand, within CA264_01095at 241.327 kb on - strand, within CA264_01095at 241.346 kb on + strand, within CA264_01095at 241.346 kb on + strand, within CA264_01095at 241.465 kb on - strand, within CA264_01095at 241.583 kb on + strandat 241.583 kb on + strandat 241.714 kb on + strandat 241.714 kb on + strandat 241.715 kb on - strandat 241.762 kb on - strandat 241.773 kb on - strandat 241.775 kb on - strandat 241.775 kb on - strandat 241.813 kb on - strandat 241.814 kb on + strandat 241.869 kb on - strandat 241.878 kb on + strandat 241.898 kb on + strandat 241.899 kb on - strandat 241.900 kb on + strandat 241.901 kb on - strandat 241.901 kb on - strandat 241.925 kb on + strandat 241.925 kb on + strandat 241.927 kb on + strandat 241.928 kb on - strandat 241.954 kb on + strandat 241.954 kb on + strandat 241.954 kb on + strandat 241.955 kb on - strandat 241.955 kb on - strandat 241.955 kb on - strandat 241.956 kb on + strandat 241.957 kb on - strandat 241.967 kb on + strandat 241.968 kb on - strandat 241.968 kb on - strandat 241.968 kb on - strandat 242.003 kb on - strandat 242.023 kb on + strandat 242.023 kb on + strandat 242.093 kb on + strand, within CA264_01100at 242.095 kb on + strand, within CA264_01100at 242.125 kb on - strand, within CA264_01100at 242.125 kb on - strand, within CA264_01100at 242.125 kb on - strand, within CA264_01100at 242.145 kb on + strand, within CA264_01100at 242.145 kb on + strand, within CA264_01100at 242.146 kb on - strand, within CA264_01100at 242.179 kb on + strand, within CA264_01100at 242.210 kb on - strand, within CA264_01100at 242.214 kb on + strand, within CA264_01100at 242.229 kb on - strand, within CA264_01100at 242.246 kb on - strand, within CA264_01100at 242.285 kb on - strandat 242.286 kb on + strandat 242.287 kb on - strandat 242.291 kb on + strandat 242.292 kb on - strandat 242.292 kb on - strandat 242.305 kb on - strandat 242.305 kb on - strandat 242.612 kb on + strand, within CA264_01105at 242.624 kb on + strand, within CA264_01105at 242.664 kb on + strand, within CA264_01105at 242.665 kb on - strand, within CA264_01105at 242.665 kb on - strand, within CA264_01105at 242.736 kb on + strand, within CA264_01105at 242.938 kb on + strandat 243.072 kb on - strandat 243.149 kb on - strandat 243.184 kb on + strandat 243.184 kb on + strandat 243.184 kb on + strandat 243.184 kb on + strandat 243.185 kb on - strandat 243.185 kb on - strandat 243.213 kb on + strandat 243.214 kb on - strandat 243.234 kb on + strandat 243.234 kb on + strandat 243.235 kb on - strandat 243.239 kb on - strandat 243.254 kb on + strandat 243.257 kb on - strandat 243.437 kb on + strand, within CA264_01110at 243.437 kb on + strand, within CA264_01110at 243.437 kb on + strand, within CA264_01110at 243.438 kb on - strand, within CA264_01110at 243.438 kb on - strand, within CA264_01110at 243.451 kb on - strand, within CA264_01110at 243.534 kb on - strand, within CA264_01110at 243.572 kb on - strand, within CA264_01110at 243.606 kb on - strand, within CA264_01110at 243.606 kb on - strand, within CA264_01110at 243.635 kb on + strand, within CA264_01110at 243.653 kb on + strand, within CA264_01110at 243.653 kb on + strand, within CA264_01110at 243.653 kb on + strand, within CA264_01110at 243.653 kb on + strand, within CA264_01110at 243.737 kb on - strand, within CA264_01110at 243.797 kb on - strand, within CA264_01110at 243.841 kb on + strand, within CA264_01110at 243.845 kb on + strand, within CA264_01110at 243.846 kb on - strand, within CA264_01110at 243.846 kb on - strand, within CA264_01110at 243.846 kb on - strand, within CA264_01110at 243.873 kb on + strand, within CA264_01110

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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241,326 + CA264_01095 0.80 -0.1
241,327 - CA264_01095 0.80 +0.9
241,346 + CA264_01095 0.81 +1.0
241,346 + CA264_01095 0.81 +0.6
241,465 - CA264_01095 0.86 +0.5
241,583 + -0.9
241,583 + -1.4
241,714 + +0.4
241,714 + +0.3
241,715 - +0.3
241,762 - +0.2
241,773 - -0.3
241,775 - +0.5
241,775 - +0.5
241,813 - +1.2
241,814 + +0.1
241,869 - -0.4
241,878 + -1.5
241,898 + +0.4
241,899 - +0.3
241,900 + +0.5
241,901 - -0.2
241,901 - -1.1
241,925 + -0.5
241,925 + -0.3
241,927 + -0.4
241,928 - +0.9
241,954 + -1.3
241,954 + -0.1
241,954 + -1.2
241,955 - +0.9
241,955 - +0.0
241,955 - +0.4
241,956 + +0.7
241,957 - -1.1
241,967 + -0.5
241,968 - -0.4
241,968 - -0.4
241,968 - -1.4
242,003 - +1.5
242,023 + +0.9
242,023 + -0.1
242,093 + CA264_01100 0.30 -1.3
242,095 + CA264_01100 0.31 -0.4
242,125 - CA264_01100 0.41 +0.3
242,125 - CA264_01100 0.41 -0.1
242,125 - CA264_01100 0.41 -0.5
242,145 + CA264_01100 0.48 -0.5
242,145 + CA264_01100 0.48 -0.3
242,146 - CA264_01100 0.49 +0.1
242,179 + CA264_01100 0.60 -0.3
242,210 - CA264_01100 0.71 +0.0
242,214 + CA264_01100 0.72 -0.3
242,229 - CA264_01100 0.77 -0.9
242,246 - CA264_01100 0.83 +0.9
242,285 - -0.2
242,286 + +0.9
242,287 - -0.2
242,291 + -0.4
242,292 - -0.4
242,292 - -0.0
242,305 - -0.2
242,305 - +0.1
242,612 + CA264_01105 0.49 +0.9
242,624 + CA264_01105 0.51 -1.2
242,664 + CA264_01105 0.58 +0.5
242,665 - CA264_01105 0.58 -0.8
242,665 - CA264_01105 0.58 -2.4
242,736 + CA264_01105 0.70 +1.5
242,938 + -0.1
243,072 - +1.1
243,149 - -0.4
243,184 + +0.0
243,184 + +0.2
243,184 + +1.4
243,184 + -0.6
243,185 - +0.2
243,185 - -0.7
243,213 + -0.6
243,214 - -0.3
243,234 + -0.1
243,234 + +0.5
243,235 - -0.4
243,239 - -0.3
243,254 + +0.7
243,257 - -0.4
243,437 + CA264_01110 0.14 +0.1
243,437 + CA264_01110 0.14 +0.2
243,437 + CA264_01110 0.14 -0.0
243,438 - CA264_01110 0.14 +0.1
243,438 - CA264_01110 0.14 -1.4
243,451 - CA264_01110 0.15 +0.1
243,534 - CA264_01110 0.19 -1.9
243,572 - CA264_01110 0.20 -0.4
243,606 - CA264_01110 0.22 -0.3
243,606 - CA264_01110 0.22 -1.7
243,635 + CA264_01110 0.24 +0.2
243,653 + CA264_01110 0.24 +0.0
243,653 + CA264_01110 0.24 -0.7
243,653 + CA264_01110 0.24 +0.1
243,653 + CA264_01110 0.24 +2.3
243,737 - CA264_01110 0.28 -0.1
243,797 - CA264_01110 0.31 -0.4
243,841 + CA264_01110 0.33 -0.5
243,845 + CA264_01110 0.34 +2.5
243,846 - CA264_01110 0.34 +0.3
243,846 - CA264_01110 0.34 -0.2
243,846 - CA264_01110 0.34 +0.1
243,873 + CA264_01110 0.35 +0.4

Or see this region's nucleotide sequence