Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1759 and Atu1760 are separated by 93 nucleotides Atu1760 and Atu8164 are separated by 269 nucleotides Atu8164 and Atu1762 are separated by 9 nucleotides Atu1762 and Atu8019 are separated by 107 nucleotides
Atu1759: Atu1759 - L-serine dehydratase, at 1,743,749 to 1,745,152
Atu1759
Atu1760: Atu1760 - hypothetical protein, at 1,745,246 to 1,745,536
Atu1760
Atu8164: Atu8164 - hypothetical protein, at 1,745,806 to 1,746,156
Atu8164
Atu1762: Atu1762 - hypothetical protein, at 1,746,166 to 1,746,930
Atu1762
Atu8019: Atu8019 - hypothetical protein, at 1,747,038 to 1,747,199
Atu8019
Position (kb) 1745
1746
1747 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 1744.827 kb on + strand, within Atu1759 at 1744.842 kb on + strand, within Atu1759 at 1745.006 kb on - strand, within Atu1759 at 1745.006 kb on - strand, within Atu1759 at 1745.108 kb on - strand at 1745.155 kb on + strand at 1745.197 kb on - strand at 1745.439 kb on + strand, within Atu1760 at 1745.669 kb on - strand at 1745.739 kb on - strand at 1745.760 kb on - strand at 1745.854 kb on - strand, within Atu8164 at 1745.879 kb on + strand, within Atu8164 at 1745.880 kb on + strand, within Atu8164 at 1745.880 kb on + strand, within Atu8164 at 1745.880 kb on + strand, within Atu8164 at 1745.887 kb on + strand, within Atu8164 at 1745.888 kb on - strand, within Atu8164 at 1745.895 kb on - strand, within Atu8164 at 1745.964 kb on - strand, within Atu8164 at 1745.984 kb on + strand, within Atu8164 at 1746.057 kb on + strand, within Atu8164 at 1746.066 kb on + strand, within Atu8164 at 1746.103 kb on + strand, within Atu8164 at 1746.103 kb on + strand, within Atu8164 at 1746.103 kb on + strand, within Atu8164 at 1746.111 kb on - strand, within Atu8164 at 1746.299 kb on + strand, within Atu1762 at 1746.299 kb on + strand, within Atu1762 at 1746.299 kb on + strand, within Atu1762 at 1746.307 kb on - strand, within Atu1762 at 1746.307 kb on - strand, within Atu1762 at 1746.307 kb on - strand, within Atu1762 at 1746.307 kb on - strand, within Atu1762 at 1746.307 kb on - strand, within Atu1762 at 1746.307 kb on - strand, within Atu1762 at 1746.307 kb on - strand, within Atu1762 at 1746.307 kb on - strand, within Atu1762 at 1746.373 kb on + strand, within Atu1762 at 1746.396 kb on + strand, within Atu1762 at 1746.404 kb on - strand, within Atu1762 at 1746.458 kb on + strand, within Atu1762 at 1746.514 kb on + strand, within Atu1762 at 1746.530 kb on + strand, within Atu1762 at 1746.661 kb on - strand, within Atu1762 at 1746.665 kb on + strand, within Atu1762 at 1746.736 kb on + strand, within Atu1762 at 1746.837 kb on - strand, within Atu1762 at 1746.946 kb on - strand at 1747.015 kb on + strand at 1747.024 kb on - strand at 1747.024 kb on - strand at 1747.056 kb on + strand, within Atu8019 at 1747.085 kb on + strand, within Atu8019
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 1,744,827 + Atu1759 0.77 +7.4 1,744,842 + Atu1759 0.78 +7.1 1,745,006 - Atu1759 0.90 +6.9 1,745,006 - Atu1759 0.90 +8.6 1,745,108 - +8.6 1,745,155 + +8.7 1,745,197 - +0.4 1,745,439 + Atu1760 0.66 -1.2 1,745,669 - +0.3 1,745,739 - -0.4 1,745,760 - -0.4 1,745,854 - Atu8164 0.14 +1.1 1,745,879 + Atu8164 0.21 -2.1 1,745,880 + Atu8164 0.21 -0.6 1,745,880 + Atu8164 0.21 +1.2 1,745,880 + Atu8164 0.21 -1.3 1,745,887 + Atu8164 0.23 -0.5 1,745,888 - Atu8164 0.23 +2.9 1,745,895 - Atu8164 0.25 +3.5 1,745,964 - Atu8164 0.45 -1.2 1,745,984 + Atu8164 0.51 +0.0 1,746,057 + Atu8164 0.72 +0.4 1,746,066 + Atu8164 0.74 -0.1 1,746,103 + Atu8164 0.85 +2.2 1,746,103 + Atu8164 0.85 +0.3 1,746,103 + Atu8164 0.85 +0.8 1,746,111 - Atu8164 0.87 +0.1 1,746,299 + Atu1762 0.17 +0.8 1,746,299 + Atu1762 0.17 -0.5 1,746,299 + Atu1762 0.17 -1.3 1,746,307 - Atu1762 0.18 +0.4 1,746,307 - Atu1762 0.18 +0.2 1,746,307 - Atu1762 0.18 +0.7 1,746,307 - Atu1762 0.18 -0.2 1,746,307 - Atu1762 0.18 +0.5 1,746,307 - Atu1762 0.18 +1.6 1,746,307 - Atu1762 0.18 -2.1 1,746,307 - Atu1762 0.18 -1.1 1,746,373 + Atu1762 0.27 -1.3 1,746,396 + Atu1762 0.30 -1.5 1,746,404 - Atu1762 0.31 -0.7 1,746,458 + Atu1762 0.38 +1.1 1,746,514 + Atu1762 0.45 -0.8 1,746,530 + Atu1762 0.48 -1.1 1,746,661 - Atu1762 0.65 +0.3 1,746,665 + Atu1762 0.65 +0.9 1,746,736 + Atu1762 0.75 -1.4 1,746,837 - Atu1762 0.88 +1.6 1,746,946 - +4.5 1,747,015 + -1.7 1,747,024 - -0.6 1,747,024 - +3.9 1,747,056 + Atu8019 0.11 -1.0 1,747,085 + Atu8019 0.29 -0.6
Or see this region's nucleotide sequence