Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5412 and Atu5413 overlap by 8 nucleotides Atu5413 and Atu5414 are separated by 31 nucleotides Atu5414 and Atu5415 overlap by 32 nucleotides
Atu5412: Atu5412 - ABC transporter membrane spanning protein, at 407,482 to 408,309
Atu5412
Atu5413: Atu5413 - ABC transporter membrane spanning protein, at 408,302 to 409,123
Atu5413
Atu5414: Atu5414 - Xaa-Pro dipeptidase, at 409,155 to 410,579
Atu5414
Atu5415: Atu5415 - hypothetical protein, at 410,548 to 411,255
Atu5415
Position (kb) 409
410
411 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 408.224 kb on + strand, within Atu5412 at 408.232 kb on - strand at 408.232 kb on - strand at 408.232 kb on - strand at 408.340 kb on + strand at 408.369 kb on + strand at 408.369 kb on + strand at 408.374 kb on + strand at 408.377 kb on - strand at 408.377 kb on - strand at 408.377 kb on - strand at 408.377 kb on - strand at 408.429 kb on - strand, within Atu5413 at 408.482 kb on - strand, within Atu5413 at 408.489 kb on - strand, within Atu5413 at 408.494 kb on + strand, within Atu5413 at 408.579 kb on - strand, within Atu5413 at 408.590 kb on + strand, within Atu5413 at 408.598 kb on - strand, within Atu5413 at 408.604 kb on - strand, within Atu5413 at 408.630 kb on - strand, within Atu5413 at 408.735 kb on - strand, within Atu5413 at 408.747 kb on + strand, within Atu5413 at 408.778 kb on - strand, within Atu5413 at 408.778 kb on - strand, within Atu5413 at 408.846 kb on - strand, within Atu5413 at 408.846 kb on - strand, within Atu5413 at 408.855 kb on + strand, within Atu5413 at 408.858 kb on + strand, within Atu5413 at 408.883 kb on - strand, within Atu5413 at 408.973 kb on + strand, within Atu5413 at 408.984 kb on - strand, within Atu5413 at 409.145 kb on + strand at 409.172 kb on - strand at 409.174 kb on + strand at 409.280 kb on - strand at 409.289 kb on + strand at 409.357 kb on + strand, within Atu5414 at 409.440 kb on - strand, within Atu5414 at 409.441 kb on - strand, within Atu5414 at 409.461 kb on - strand, within Atu5414 at 409.461 kb on - strand, within Atu5414 at 409.463 kb on + strand, within Atu5414 at 409.516 kb on + strand, within Atu5414 at 409.543 kb on - strand, within Atu5414 at 409.598 kb on - strand, within Atu5414 at 409.620 kb on + strand, within Atu5414 at 409.638 kb on + strand, within Atu5414 at 409.676 kb on - strand, within Atu5414 at 409.677 kb on - strand, within Atu5414 at 409.800 kb on - strand, within Atu5414 at 409.806 kb on + strand, within Atu5414 at 409.854 kb on + strand, within Atu5414 at 409.854 kb on + strand, within Atu5414 at 409.951 kb on - strand, within Atu5414 at 409.989 kb on - strand, within Atu5414 at 410.005 kb on + strand, within Atu5414 at 410.009 kb on + strand, within Atu5414 at 410.103 kb on - strand, within Atu5414 at 410.174 kb on - strand, within Atu5414 at 410.194 kb on + strand, within Atu5414 at 410.201 kb on + strand, within Atu5414 at 410.214 kb on + strand, within Atu5414 at 410.217 kb on - strand, within Atu5414 at 410.235 kb on + strand, within Atu5414 at 410.250 kb on + strand, within Atu5414 at 410.259 kb on - strand, within Atu5414 at 410.300 kb on - strand, within Atu5414 at 410.339 kb on + strand, within Atu5414 at 410.344 kb on + strand, within Atu5414 at 410.344 kb on + strand, within Atu5414 at 410.352 kb on - strand, within Atu5414 at 410.420 kb on + strand, within Atu5414 at 410.429 kb on + strand, within Atu5414 at 410.458 kb on + strand at 410.495 kb on + strand at 410.678 kb on + strand, within Atu5415 at 410.686 kb on + strand, within Atu5415 at 410.694 kb on - strand, within Atu5415 at 410.696 kb on - strand, within Atu5415 at 410.715 kb on + strand, within Atu5415 at 410.715 kb on + strand, within Atu5415 at 410.728 kb on - strand, within Atu5415 at 410.787 kb on + strand, within Atu5415 at 410.859 kb on - strand, within Atu5415 at 410.889 kb on - strand, within Atu5415 at 410.955 kb on + strand, within Atu5415 at 410.963 kb on - strand, within Atu5415 at 410.963 kb on - strand, within Atu5415 at 411.035 kb on + strand, within Atu5415 at 411.047 kb on + strand, within Atu5415 at 411.168 kb on - strand, within Atu5415 at 411.169 kb on - strand, within Atu5415 at 411.191 kb on - strand at 411.205 kb on + strand at 411.250 kb on + strand at 411.250 kb on + strand at 411.350 kb on - strand at 411.352 kb on + strand at 411.375 kb on + strand at 411.448 kb on - strand at 411.484 kb on + strand at 411.498 kb on + strand at 411.520 kb on + strand at 411.521 kb on - strand at 411.525 kb on + strand at 411.525 kb on + strand at 411.573 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 408,224 + Atu5412 0.90 -0.0 408,232 - -0.5 408,232 - +2.7 408,232 - +0.5 408,340 + -0.2 408,369 + -0.6 408,369 + -1.0 408,374 + +0.1 408,377 - -2.1 408,377 - -0.9 408,377 - -0.8 408,377 - -0.2 408,429 - Atu5413 0.15 +0.6 408,482 - Atu5413 0.22 +0.1 408,489 - Atu5413 0.23 -0.7 408,494 + Atu5413 0.23 -0.5 408,579 - Atu5413 0.34 -0.1 408,590 + Atu5413 0.35 -2.4 408,598 - Atu5413 0.36 -2.9 408,604 - Atu5413 0.37 +0.9 408,630 - Atu5413 0.40 +3.1 408,735 - Atu5413 0.53 +4.2 408,747 + Atu5413 0.54 -0.6 408,778 - Atu5413 0.58 -0.6 408,778 - Atu5413 0.58 -2.1 408,846 - Atu5413 0.66 +2.1 408,846 - Atu5413 0.66 +0.7 408,855 + Atu5413 0.67 +1.1 408,858 + Atu5413 0.68 -0.5 408,883 - Atu5413 0.71 +0.5 408,973 + Atu5413 0.82 +0.0 408,984 - Atu5413 0.83 +1.6 409,145 + +5.0 409,172 - +0.2 409,174 + +3.2 409,280 - +4.1 409,289 + +0.1 409,357 + Atu5414 0.14 +1.6 409,440 - Atu5414 0.20 -0.6 409,441 - Atu5414 0.20 +0.4 409,461 - Atu5414 0.21 +0.7 409,461 - Atu5414 0.21 -0.1 409,463 + Atu5414 0.22 +2.3 409,516 + Atu5414 0.25 +1.4 409,543 - Atu5414 0.27 -0.7 409,598 - Atu5414 0.31 +8.6 409,620 + Atu5414 0.33 -1.2 409,638 + Atu5414 0.34 +0.6 409,676 - Atu5414 0.37 -0.5 409,677 - Atu5414 0.37 -0.3 409,800 - Atu5414 0.45 +0.5 409,806 + Atu5414 0.46 +1.1 409,854 + Atu5414 0.49 -1.9 409,854 + Atu5414 0.49 -0.8 409,951 - Atu5414 0.56 +1.1 409,989 - Atu5414 0.59 -0.2 410,005 + Atu5414 0.60 -2.2 410,009 + Atu5414 0.60 +0.3 410,103 - Atu5414 0.67 -0.4 410,174 - Atu5414 0.72 -0.2 410,194 + Atu5414 0.73 +1.0 410,201 + Atu5414 0.73 -0.8 410,214 + Atu5414 0.74 +0.9 410,217 - Atu5414 0.75 -0.5 410,235 + Atu5414 0.76 +2.6 410,250 + Atu5414 0.77 -0.3 410,259 - Atu5414 0.77 -1.2 410,300 - Atu5414 0.80 +2.8 410,339 + Atu5414 0.83 +0.4 410,344 + Atu5414 0.83 -0.9 410,344 + Atu5414 0.83 +1.9 410,352 - Atu5414 0.84 +2.7 410,420 + Atu5414 0.89 +1.1 410,429 + Atu5414 0.89 +0.5 410,458 + -0.6 410,495 + -1.9 410,678 + Atu5415 0.18 +0.3 410,686 + Atu5415 0.19 +0.5 410,694 - Atu5415 0.21 -0.9 410,696 - Atu5415 0.21 +0.7 410,715 + Atu5415 0.24 -1.3 410,715 + Atu5415 0.24 +1.9 410,728 - Atu5415 0.25 +1.9 410,787 + Atu5415 0.34 -0.2 410,859 - Atu5415 0.44 +3.4 410,889 - Atu5415 0.48 -0.8 410,955 + Atu5415 0.57 -0.2 410,963 - Atu5415 0.59 +3.5 410,963 - Atu5415 0.59 -1.1 411,035 + Atu5415 0.69 -0.2 411,047 + Atu5415 0.70 -1.9 411,168 - Atu5415 0.88 +0.5 411,169 - Atu5415 0.88 -2.0 411,191 - -0.2 411,205 + -2.2 411,250 + -0.7 411,250 + +0.1 411,350 - -0.1 411,352 + -0.9 411,375 + +1.1 411,448 - +1.2 411,484 + -0.5 411,498 + +0.2 411,520 + +1.4 411,521 - +0.0 411,525 + -1.7 411,525 + +0.1 411,573 + +0.7
Or see this region's nucleotide sequence