Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5207 and Atu5208 are separated by 163 nucleotides Atu5208 and Atu5209 are separated by 138 nucleotides Atu5209 and Atu5210 overlap by 4 nucleotides
Atu5207: Atu5207 - hypothetical protein, at 205,381 to 206,214
Atu5207
Atu5208: Atu5208 - LysR family transcriptional regulator, at 206,378 to 207,277
Atu5208
Atu5209: Atu5209 - hypothetical protein, at 207,416 to 207,745
Atu5209
Atu5210: Atu5210 - short chain dehydrogenase, at 207,742 to 208,521
Atu5210
Position (kb) 206
207
208 Strain fitness (log2 ratio) -1
0
1
2 at 205.378 kb on + strand at 205.469 kb on + strand, within Atu5207 at 205.477 kb on - strand, within Atu5207 at 205.804 kb on + strand, within Atu5207 at 205.838 kb on - strand, within Atu5207 at 205.856 kb on + strand, within Atu5207 at 205.856 kb on + strand, within Atu5207 at 205.981 kb on + strand, within Atu5207 at 205.981 kb on + strand, within Atu5207 at 205.981 kb on + strand, within Atu5207 at 205.989 kb on - strand, within Atu5207 at 206.082 kb on + strand, within Atu5207 at 206.090 kb on - strand, within Atu5207 at 206.141 kb on + strand at 206.149 kb on - strand at 206.288 kb on - strand at 206.289 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 205,378 + -0.1 205,469 + Atu5207 0.11 -1.7 205,477 - Atu5207 0.12 -0.5 205,804 + Atu5207 0.51 -0.1 205,838 - Atu5207 0.55 -1.5 205,856 + Atu5207 0.57 +1.5 205,856 + Atu5207 0.57 -1.2 205,981 + Atu5207 0.72 +0.1 205,981 + Atu5207 0.72 -0.5 205,981 + Atu5207 0.72 -0.3 205,989 - Atu5207 0.73 -0.5 206,082 + Atu5207 0.84 +1.9 206,090 - Atu5207 0.85 +0.5 206,141 + -0.4 206,149 - -0.4 206,288 - +0.3 206,289 - -1.0
Or see this region's nucleotide sequence