Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3890 and Atu3891 are separated by 72 nucleotides Atu3891 and Atu3892 are separated by 187 nucleotides Atu3892 and Atu3893 are separated by 2 nucleotides
Atu3890: Atu3890 - glycerol kinase, at 984,511 to 986,010
Atu3890
Atu3891: Atu3891 - hypothetical protein, at 986,083 to 987,804
Atu3891
Atu3892: Atu3892 - hypothetical protein, at 987,992 to 988,285
Atu3892
Atu3893: Atu3893 - sugarl ABC transporter permease, at 988,288 to 989,202
Atu3893
Position (kb) 986
987
988 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 985.203 kb on + strand, within Atu3890 at 985.203 kb on + strand, within Atu3890 at 985.203 kb on + strand, within Atu3890 at 985.229 kb on + strand, within Atu3890 at 985.357 kb on + strand, within Atu3890 at 985.360 kb on - strand, within Atu3890 at 985.365 kb on - strand, within Atu3890 at 985.436 kb on - strand, within Atu3890 at 985.497 kb on + strand, within Atu3890 at 985.505 kb on - strand, within Atu3890 at 985.674 kb on - strand, within Atu3890 at 985.703 kb on + strand, within Atu3890 at 985.718 kb on - strand, within Atu3890 at 985.720 kb on + strand, within Atu3890 at 985.770 kb on + strand, within Atu3890 at 985.778 kb on - strand, within Atu3890 at 985.873 kb on + strand at 985.881 kb on - strand at 985.928 kb on - strand at 985.964 kb on - strand at 986.071 kb on - strand at 986.242 kb on + strand at 986.245 kb on + strand at 986.247 kb on + strand at 986.294 kb on - strand, within Atu3891 at 986.490 kb on + strand, within Atu3891 at 986.563 kb on - strand, within Atu3891 at 986.563 kb on - strand, within Atu3891 at 986.646 kb on + strand, within Atu3891 at 986.705 kb on + strand, within Atu3891 at 986.772 kb on - strand, within Atu3891 at 986.794 kb on - strand, within Atu3891 at 986.799 kb on - strand, within Atu3891 at 986.811 kb on - strand, within Atu3891 at 986.824 kb on + strand, within Atu3891 at 986.825 kb on + strand, within Atu3891 at 986.825 kb on + strand, within Atu3891 at 986.833 kb on - strand, within Atu3891 at 986.837 kb on + strand, within Atu3891 at 987.086 kb on - strand, within Atu3891 at 987.147 kb on + strand, within Atu3891 at 987.155 kb on - strand, within Atu3891 at 987.211 kb on - strand, within Atu3891 at 987.228 kb on + strand, within Atu3891 at 987.228 kb on + strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.250 kb on - strand, within Atu3891 at 987.309 kb on - strand, within Atu3891 at 987.330 kb on + strand, within Atu3891 at 987.349 kb on - strand, within Atu3891 at 987.393 kb on + strand, within Atu3891 at 987.471 kb on - strand, within Atu3891 at 987.521 kb on - strand, within Atu3891 at 987.532 kb on - strand, within Atu3891 at 987.667 kb on - strand at 987.725 kb on + strand at 987.726 kb on - strand at 987.821 kb on - strand at 987.901 kb on - strand at 987.989 kb on + strand at 988.016 kb on + strand at 988.016 kb on + strand at 988.059 kb on - strand, within Atu3892 at 988.076 kb on + strand, within Atu3892 at 988.125 kb on - strand, within Atu3892 at 988.193 kb on - strand, within Atu3892 at 988.247 kb on + strand, within Atu3892 at 988.255 kb on - strand, within Atu3892 at 988.287 kb on + strand at 988.294 kb on - strand at 988.294 kb on - strand at 988.317 kb on - strand at 988.389 kb on + strand, within Atu3893 at 988.397 kb on - strand, within Atu3893 at 988.416 kb on + strand, within Atu3893 at 988.490 kb on + strand, within Atu3893 at 988.671 kb on + strand, within Atu3893 at 988.708 kb on - strand, within Atu3893 at 988.761 kb on + strand, within Atu3893
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 985,203 + Atu3890 0.46 +0.1 985,203 + Atu3890 0.46 -1.1 985,203 + Atu3890 0.46 -0.5 985,229 + Atu3890 0.48 +0.1 985,357 + Atu3890 0.56 -1.5 985,360 - Atu3890 0.57 -0.3 985,365 - Atu3890 0.57 +2.0 985,436 - Atu3890 0.62 -0.8 985,497 + Atu3890 0.66 +0.0 985,505 - Atu3890 0.66 -0.2 985,674 - Atu3890 0.78 -1.5 985,703 + Atu3890 0.79 +1.3 985,718 - Atu3890 0.80 +0.4 985,720 + Atu3890 0.81 -1.6 985,770 + Atu3890 0.84 -1.1 985,778 - Atu3890 0.84 -0.2 985,873 + +0.3 985,881 - -0.3 985,928 - -0.4 985,964 - +0.7 986,071 - -0.5 986,242 + +0.3 986,245 + -0.6 986,247 + -1.0 986,294 - Atu3891 0.12 +0.1 986,490 + Atu3891 0.24 -1.0 986,563 - Atu3891 0.28 +1.3 986,563 - Atu3891 0.28 -0.5 986,646 + Atu3891 0.33 +1.1 986,705 + Atu3891 0.36 -0.2 986,772 - Atu3891 0.40 -1.2 986,794 - Atu3891 0.41 +2.7 986,799 - Atu3891 0.42 -0.6 986,811 - Atu3891 0.42 +1.3 986,824 + Atu3891 0.43 -0.1 986,825 + Atu3891 0.43 -0.5 986,825 + Atu3891 0.43 +3.3 986,833 - Atu3891 0.44 +1.6 986,837 + Atu3891 0.44 -0.8 987,086 - Atu3891 0.58 -1.8 987,147 + Atu3891 0.62 +0.7 987,155 - Atu3891 0.62 -1.9 987,211 - Atu3891 0.66 +2.2 987,228 + Atu3891 0.66 +0.0 987,228 + Atu3891 0.66 +0.4 987,250 - Atu3891 0.68 +2.9 987,250 - Atu3891 0.68 +0.3 987,250 - Atu3891 0.68 +1.9 987,250 - Atu3891 0.68 +0.0 987,250 - Atu3891 0.68 +1.9 987,309 - Atu3891 0.71 +0.3 987,330 + Atu3891 0.72 +0.0 987,349 - Atu3891 0.74 +1.6 987,393 + Atu3891 0.76 -0.9 987,471 - Atu3891 0.81 +0.9 987,521 - Atu3891 0.84 +0.4 987,532 - Atu3891 0.84 +0.8 987,667 - +0.3 987,725 + +0.0 987,726 - -0.8 987,821 - -0.1 987,901 - -0.0 987,989 + +0.3 988,016 + -1.1 988,016 + -0.1 988,059 - Atu3892 0.23 -0.4 988,076 + Atu3892 0.29 -0.4 988,125 - Atu3892 0.45 -0.3 988,193 - Atu3892 0.68 +0.3 988,247 + Atu3892 0.87 +1.0 988,255 - Atu3892 0.89 -0.9 988,287 + +0.1 988,294 - +0.6 988,294 - +5.9 988,317 - +8.5 988,389 + Atu3893 0.11 +0.8 988,397 - Atu3893 0.12 +0.2 988,416 + Atu3893 0.14 -0.9 988,490 + Atu3893 0.22 +2.6 988,671 + Atu3893 0.42 +0.4 988,708 - Atu3893 0.46 +0.4 988,761 + Atu3893 0.52 +0.0
Or see this region's nucleotide sequence