Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3810 and Atu3811 are separated by 153 nucleotides Atu3811 and Atu3812 are separated by 182 nucleotides Atu3812 and Atu3813 are separated by 262 nucleotides
Atu3810: Atu3810 - LysR family transcriptional regulator, at 906,727 to 907,620
Atu3810
Atu3811: Atu3811 - hydrolase, at 907,774 to 908,418
Atu3811
Atu3812: Atu3812 - hypothetical protein, at 908,601 to 909,008
Atu3812
Atu3813: Atu3813 - 3-oxoacyl-ACP reductase, at 909,271 to 910,017
Atu3813
Position (kb) 908
909
910 Strain fitness (log2 ratio) -2
-1
0
1
2 at 907.644 kb on + strand at 907.730 kb on + strand at 907.838 kb on + strand at 907.869 kb on - strand, within Atu3811 at 907.953 kb on - strand, within Atu3811 at 908.006 kb on + strand, within Atu3811 at 908.037 kb on + strand, within Atu3811 at 908.045 kb on - strand, within Atu3811 at 908.103 kb on - strand, within Atu3811 at 908.120 kb on - strand, within Atu3811 at 908.120 kb on - strand, within Atu3811 at 908.165 kb on + strand, within Atu3811 at 908.165 kb on + strand, within Atu3811 at 908.172 kb on - strand, within Atu3811 at 908.172 kb on - strand, within Atu3811 at 908.213 kb on + strand, within Atu3811 at 908.257 kb on + strand, within Atu3811 at 908.314 kb on + strand, within Atu3811 at 908.319 kb on + strand, within Atu3811 at 908.322 kb on - strand, within Atu3811 at 908.375 kb on + strand at 908.415 kb on - strand at 908.506 kb on + strand at 908.554 kb on - strand at 908.568 kb on + strand at 908.578 kb on - strand at 908.584 kb on - strand at 908.586 kb on + strand at 908.647 kb on - strand, within Atu3812 at 908.671 kb on + strand, within Atu3812 at 908.671 kb on + strand, within Atu3812 at 908.679 kb on - strand, within Atu3812 at 908.717 kb on + strand, within Atu3812 at 908.872 kb on + strand, within Atu3812 at 908.916 kb on + strand, within Atu3812 at 908.916 kb on + strand, within Atu3812 at 908.916 kb on + strand, within Atu3812 at 908.924 kb on - strand, within Atu3812 at 908.999 kb on - strand at 909.003 kb on + strand at 909.011 kb on - strand at 909.097 kb on + strand at 909.097 kb on + strand at 909.117 kb on + strand at 909.135 kb on - strand at 909.179 kb on + strand at 909.181 kb on + strand at 909.278 kb on + strand at 909.334 kb on - strand at 909.411 kb on + strand, within Atu3813 at 909.517 kb on + strand, within Atu3813 at 909.517 kb on + strand, within Atu3813 at 909.557 kb on + strand, within Atu3813 at 909.571 kb on - strand, within Atu3813 at 909.640 kb on + strand, within Atu3813 at 909.640 kb on + strand, within Atu3813 at 909.711 kb on + strand, within Atu3813 at 909.750 kb on - strand, within Atu3813 at 909.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 907,644 + -1.1 907,730 + -0.4 907,838 + +1.0 907,869 - Atu3811 0.15 +0.3 907,953 - Atu3811 0.28 -1.2 908,006 + Atu3811 0.36 +0.3 908,037 + Atu3811 0.41 -2.4 908,045 - Atu3811 0.42 -0.7 908,103 - Atu3811 0.51 +2.6 908,120 - Atu3811 0.54 -1.1 908,120 - Atu3811 0.54 +1.4 908,165 + Atu3811 0.61 -0.7 908,165 + Atu3811 0.61 +1.6 908,172 - Atu3811 0.62 -0.2 908,172 - Atu3811 0.62 -1.9 908,213 + Atu3811 0.68 -0.3 908,257 + Atu3811 0.75 -0.0 908,314 + Atu3811 0.84 +2.6 908,319 + Atu3811 0.84 +0.4 908,322 - Atu3811 0.85 +0.0 908,375 + +1.1 908,415 - +0.8 908,506 + +0.9 908,554 - -0.1 908,568 + -1.1 908,578 - +0.4 908,584 - +2.3 908,586 + +1.9 908,647 - Atu3812 0.11 +1.0 908,671 + Atu3812 0.17 +1.0 908,671 + Atu3812 0.17 +0.8 908,679 - Atu3812 0.19 -0.3 908,717 + Atu3812 0.28 -0.5 908,872 + Atu3812 0.66 -1.0 908,916 + Atu3812 0.77 -0.4 908,916 + Atu3812 0.77 -0.4 908,916 + Atu3812 0.77 -0.4 908,924 - Atu3812 0.79 -1.8 908,999 - +0.8 909,003 + +0.3 909,011 - +1.0 909,097 + -0.6 909,097 + +1.0 909,117 + +0.6 909,135 - +0.7 909,179 + -1.7 909,181 + -0.1 909,278 + -0.4 909,334 - +0.4 909,411 + Atu3813 0.19 +0.8 909,517 + Atu3813 0.33 +0.6 909,517 + Atu3813 0.33 +0.5 909,557 + Atu3813 0.38 -0.1 909,571 - Atu3813 0.40 +0.2 909,640 + Atu3813 0.49 -0.3 909,640 + Atu3813 0.49 +0.6 909,711 + Atu3813 0.59 -0.0 909,750 - Atu3813 0.64 +0.7 909,956 - +0.1
Or see this region's nucleotide sequence