Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3356 and Atu3357 are separated by 254 nucleotides Atu3357 and Atu3358 are separated by 295 nucleotides Atu3358 and Atu3359 overlap by 4 nucleotides
Atu3356: Atu3356 - malic enzyme, at 392,736 to 395,024
Atu3356
Atu3357: Atu3357 - amino acid ABC transporter substrate-binding protein, at 395,279 to 396,118
Atu3357
Atu3358: Atu3358 - amino acid ABC transporter permease, at 396,414 to 397,046
Atu3358
Atu3359: Atu3359 - amino acid ABC transporter permease, at 397,043 to 397,825
Atu3359
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.309 kb on - strand, within Atu3356 at 394.349 kb on - strand, within Atu3356 at 394.462 kb on - strand, within Atu3356 at 394.475 kb on + strand, within Atu3356 at 394.482 kb on - strand, within Atu3356 at 394.627 kb on + strand, within Atu3356 at 394.635 kb on - strand, within Atu3356 at 394.635 kb on - strand, within Atu3356 at 394.841 kb on + strand at 394.942 kb on - strand at 395.006 kb on + strand at 395.012 kb on - strand at 395.014 kb on - strand at 395.014 kb on - strand at 395.043 kb on - strand at 395.081 kb on + strand at 395.409 kb on + strand, within Atu3357 at 395.419 kb on + strand, within Atu3357 at 395.491 kb on + strand, within Atu3357 at 395.511 kb on + strand, within Atu3357 at 395.519 kb on - strand, within Atu3357 at 395.519 kb on - strand, within Atu3357 at 395.526 kb on + strand, within Atu3357 at 395.540 kb on + strand, within Atu3357 at 395.542 kb on + strand, within Atu3357 at 395.708 kb on + strand, within Atu3357 at 395.742 kb on + strand, within Atu3357 at 395.778 kb on + strand, within Atu3357 at 395.781 kb on - strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.867 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.887 kb on + strand, within Atu3357 at 395.978 kb on - strand, within Atu3357 at 395.979 kb on - strand, within Atu3357 at 396.060 kb on - strand at 396.089 kb on - strand at 396.100 kb on + strand at 396.336 kb on - strand at 396.387 kb on + strand at 396.387 kb on + strand at 396.485 kb on - strand, within Atu3358 at 396.490 kb on - strand, within Atu3358 at 396.492 kb on + strand, within Atu3358 at 396.626 kb on - strand, within Atu3358 at 396.626 kb on - strand, within Atu3358 at 396.626 kb on - strand, within Atu3358 at 396.626 kb on - strand, within Atu3358 at 396.696 kb on + strand, within Atu3358 at 396.906 kb on + strand, within Atu3358 at 396.911 kb on + strand, within Atu3358 at 396.919 kb on - strand, within Atu3358 at 396.921 kb on - strand, within Atu3358 at 396.933 kb on + strand, within Atu3358 at 397.000 kb on + strand at 397.034 kb on - strand at 397.097 kb on + strand at 397.105 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 394,309 - Atu3356 0.69 -0.6 394,349 - Atu3356 0.70 +0.3 394,462 - Atu3356 0.75 +1.0 394,475 + Atu3356 0.76 -0.3 394,482 - Atu3356 0.76 +0.2 394,627 + Atu3356 0.83 -0.6 394,635 - Atu3356 0.83 +1.5 394,635 - Atu3356 0.83 +1.7 394,841 + +0.1 394,942 - +1.5 395,006 + -0.2 395,012 - -0.2 395,014 - -0.5 395,014 - -0.4 395,043 - +1.5 395,081 + +1.8 395,409 + Atu3357 0.15 +0.2 395,419 + Atu3357 0.17 -0.4 395,491 + Atu3357 0.25 -0.9 395,511 + Atu3357 0.28 +0.0 395,519 - Atu3357 0.29 -1.2 395,519 - Atu3357 0.29 -0.6 395,526 + Atu3357 0.29 -1.6 395,540 + Atu3357 0.31 -0.1 395,542 + Atu3357 0.31 +0.7 395,708 + Atu3357 0.51 -0.3 395,742 + Atu3357 0.55 -0.1 395,778 + Atu3357 0.59 -0.3 395,781 - Atu3357 0.60 -0.0 395,785 + Atu3357 0.60 -1.8 395,785 + Atu3357 0.60 +1.5 395,785 + Atu3357 0.60 +0.1 395,785 + Atu3357 0.60 -0.3 395,793 - Atu3357 0.61 +0.8 395,793 - Atu3357 0.61 +0.1 395,793 - Atu3357 0.61 +0.3 395,793 - Atu3357 0.61 -1.5 395,793 - Atu3357 0.61 +1.4 395,793 - Atu3357 0.61 +0.3 395,867 + Atu3357 0.70 -1.4 395,882 + Atu3357 0.72 -0.2 395,882 + Atu3357 0.72 +0.5 395,882 + Atu3357 0.72 +0.5 395,882 + Atu3357 0.72 +1.0 395,882 + Atu3357 0.72 -1.8 395,887 + Atu3357 0.72 -0.3 395,978 - Atu3357 0.83 -1.5 395,979 - Atu3357 0.83 -0.0 396,060 - -0.6 396,089 - +0.5 396,100 + -0.3 396,336 - -0.8 396,387 + -0.5 396,387 + -0.2 396,485 - Atu3358 0.11 +1.2 396,490 - Atu3358 0.12 +0.5 396,492 + Atu3358 0.12 +2.3 396,626 - Atu3358 0.33 -0.2 396,626 - Atu3358 0.33 +0.5 396,626 - Atu3358 0.33 -1.4 396,626 - Atu3358 0.33 +0.1 396,696 + Atu3358 0.45 +0.5 396,906 + Atu3358 0.78 -0.4 396,911 + Atu3358 0.79 -0.3 396,919 - Atu3358 0.80 -2.1 396,921 - Atu3358 0.80 +0.9 396,933 + Atu3358 0.82 +0.7 397,000 + -0.6 397,034 - +0.8 397,097 + +1.5 397,105 + -0.5
Or see this region's nucleotide sequence