Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3355 and Atu3356 are separated by 160 nucleotides Atu3356 and Atu3357 are separated by 254 nucleotides
Atu3355: Atu3355 - LysR family transcriptional regulator, at 391,676 to 392,575
Atu3355
Atu3356: Atu3356 - malic enzyme, at 392,736 to 395,024
Atu3356
Atu3357: Atu3357 - amino acid ABC transporter substrate-binding protein, at 395,279 to 396,118
Atu3357
Position (kb) 392
393
394
395
396 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 391.737 kb on + strand at 391.767 kb on + strand, within Atu3355 at 391.775 kb on - strand, within Atu3355 at 391.775 kb on - strand, within Atu3355 at 391.777 kb on + strand, within Atu3355 at 391.807 kb on - strand, within Atu3355 at 391.878 kb on - strand, within Atu3355 at 392.024 kb on + strand, within Atu3355 at 392.034 kb on - strand, within Atu3355 at 392.048 kb on + strand, within Atu3355 at 392.162 kb on + strand, within Atu3355 at 392.180 kb on - strand, within Atu3355 at 392.192 kb on - strand, within Atu3355 at 392.194 kb on + strand, within Atu3355 at 392.194 kb on + strand, within Atu3355 at 392.370 kb on - strand, within Atu3355 at 392.370 kb on - strand, within Atu3355 at 392.370 kb on - strand, within Atu3355 at 392.456 kb on + strand, within Atu3355 at 392.464 kb on - strand, within Atu3355 at 392.464 kb on - strand, within Atu3355 at 392.466 kb on - strand, within Atu3355 at 392.487 kb on - strand at 392.497 kb on + strand at 392.497 kb on + strand at 392.505 kb on - strand at 392.648 kb on + strand at 392.658 kb on - strand at 392.772 kb on - strand at 392.813 kb on - strand at 392.813 kb on - strand at 392.826 kb on + strand at 392.890 kb on + strand at 392.890 kb on + strand at 393.022 kb on + strand, within Atu3356 at 393.022 kb on + strand, within Atu3356 at 393.030 kb on - strand, within Atu3356 at 393.046 kb on + strand, within Atu3356 at 393.108 kb on - strand, within Atu3356 at 393.139 kb on + strand, within Atu3356 at 393.139 kb on + strand, within Atu3356 at 393.147 kb on - strand, within Atu3356 at 393.151 kb on + strand, within Atu3356 at 393.174 kb on - strand, within Atu3356 at 393.184 kb on - strand, within Atu3356 at 393.184 kb on - strand, within Atu3356 at 393.184 kb on - strand, within Atu3356 at 393.184 kb on - strand, within Atu3356 at 393.287 kb on + strand, within Atu3356 at 393.295 kb on - strand, within Atu3356 at 393.335 kb on + strand, within Atu3356 at 393.370 kb on + strand, within Atu3356 at 393.378 kb on - strand, within Atu3356 at 393.380 kb on + strand, within Atu3356 at 393.380 kb on + strand, within Atu3356 at 393.380 kb on + strand, within Atu3356 at 393.380 kb on + strand, within Atu3356 at 393.388 kb on - strand, within Atu3356 at 393.388 kb on - strand, within Atu3356 at 393.474 kb on + strand, within Atu3356 at 393.529 kb on + strand, within Atu3356 at 393.529 kb on - strand, within Atu3356 at 393.537 kb on - strand, within Atu3356 at 393.554 kb on + strand, within Atu3356 at 393.628 kb on - strand, within Atu3356 at 393.628 kb on - strand, within Atu3356 at 393.703 kb on + strand, within Atu3356 at 393.703 kb on + strand, within Atu3356 at 393.721 kb on - strand, within Atu3356 at 393.754 kb on + strand, within Atu3356 at 393.776 kb on + strand, within Atu3356 at 393.815 kb on + strand, within Atu3356 at 393.886 kb on + strand, within Atu3356 at 394.046 kb on - strand, within Atu3356 at 394.079 kb on + strand, within Atu3356 at 394.163 kb on + strand, within Atu3356 at 394.191 kb on - strand, within Atu3356 at 394.191 kb on - strand, within Atu3356 at 394.309 kb on - strand, within Atu3356 at 394.349 kb on - strand, within Atu3356 at 394.462 kb on - strand, within Atu3356 at 394.475 kb on + strand, within Atu3356 at 394.482 kb on - strand, within Atu3356 at 394.627 kb on + strand, within Atu3356 at 394.635 kb on - strand, within Atu3356 at 394.635 kb on - strand, within Atu3356 at 394.841 kb on + strand at 394.942 kb on - strand at 395.006 kb on + strand at 395.012 kb on - strand at 395.014 kb on - strand at 395.014 kb on - strand at 395.043 kb on - strand at 395.081 kb on + strand at 395.409 kb on + strand, within Atu3357 at 395.419 kb on + strand, within Atu3357 at 395.491 kb on + strand, within Atu3357 at 395.511 kb on + strand, within Atu3357 at 395.519 kb on - strand, within Atu3357 at 395.519 kb on - strand, within Atu3357 at 395.526 kb on + strand, within Atu3357 at 395.540 kb on + strand, within Atu3357 at 395.542 kb on + strand, within Atu3357 at 395.708 kb on + strand, within Atu3357 at 395.742 kb on + strand, within Atu3357 at 395.778 kb on + strand, within Atu3357 at 395.781 kb on - strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.867 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.887 kb on + strand, within Atu3357 at 395.978 kb on - strand, within Atu3357 at 395.979 kb on - strand, within Atu3357
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 391,737 + +0.2 391,767 + Atu3355 0.10 -0.4 391,775 - Atu3355 0.11 +0.2 391,775 - Atu3355 0.11 +0.9 391,777 + Atu3355 0.11 +1.3 391,807 - Atu3355 0.15 -0.3 391,878 - Atu3355 0.22 -0.1 392,024 + Atu3355 0.39 -0.5 392,034 - Atu3355 0.40 +1.6 392,048 + Atu3355 0.41 -0.9 392,162 + Atu3355 0.54 +0.0 392,180 - Atu3355 0.56 +0.1 392,192 - Atu3355 0.57 +1.2 392,194 + Atu3355 0.58 -2.1 392,194 + Atu3355 0.58 -0.2 392,370 - Atu3355 0.77 +1.1 392,370 - Atu3355 0.77 -1.1 392,370 - Atu3355 0.77 +1.2 392,456 + Atu3355 0.87 -0.2 392,464 - Atu3355 0.88 -0.2 392,464 - Atu3355 0.88 -1.3 392,466 - Atu3355 0.88 +2.5 392,487 - +0.3 392,497 + +2.8 392,497 + -0.3 392,505 - +0.7 392,648 + -0.2 392,658 - +0.3 392,772 - +0.4 392,813 - +0.2 392,813 - +4.0 392,826 + -0.8 392,890 + +0.2 392,890 + -0.8 393,022 + Atu3356 0.12 -0.3 393,022 + Atu3356 0.12 +0.9 393,030 - Atu3356 0.13 +1.3 393,046 + Atu3356 0.14 -0.6 393,108 - Atu3356 0.16 -0.1 393,139 + Atu3356 0.18 -0.2 393,139 + Atu3356 0.18 -0.5 393,147 - Atu3356 0.18 -1.9 393,151 + Atu3356 0.18 -0.6 393,174 - Atu3356 0.19 -0.8 393,184 - Atu3356 0.20 +0.7 393,184 - Atu3356 0.20 +0.3 393,184 - Atu3356 0.20 -0.3 393,184 - Atu3356 0.20 +2.5 393,287 + Atu3356 0.24 +0.1 393,295 - Atu3356 0.24 +0.1 393,335 + Atu3356 0.26 -0.1 393,370 + Atu3356 0.28 -0.2 393,378 - Atu3356 0.28 +1.7 393,380 + Atu3356 0.28 -0.7 393,380 + Atu3356 0.28 +0.1 393,380 + Atu3356 0.28 -0.5 393,380 + Atu3356 0.28 -0.8 393,388 - Atu3356 0.28 -0.4 393,388 - Atu3356 0.28 +0.5 393,474 + Atu3356 0.32 +1.9 393,529 + Atu3356 0.35 +0.4 393,529 - Atu3356 0.35 -0.8 393,537 - Atu3356 0.35 -1.3 393,554 + Atu3356 0.36 +0.1 393,628 - Atu3356 0.39 -0.4 393,628 - Atu3356 0.39 +1.6 393,703 + Atu3356 0.42 -0.4 393,703 + Atu3356 0.42 -1.5 393,721 - Atu3356 0.43 -0.1 393,754 + Atu3356 0.44 +2.8 393,776 + Atu3356 0.45 -1.1 393,815 + Atu3356 0.47 +0.6 393,886 + Atu3356 0.50 -0.2 394,046 - Atu3356 0.57 -1.4 394,079 + Atu3356 0.59 +0.2 394,163 + Atu3356 0.62 -1.0 394,191 - Atu3356 0.64 -0.4 394,191 - Atu3356 0.64 +1.3 394,309 - Atu3356 0.69 -0.6 394,349 - Atu3356 0.70 +0.3 394,462 - Atu3356 0.75 +1.0 394,475 + Atu3356 0.76 -0.3 394,482 - Atu3356 0.76 +0.2 394,627 + Atu3356 0.83 -0.6 394,635 - Atu3356 0.83 +1.5 394,635 - Atu3356 0.83 +1.7 394,841 + +0.1 394,942 - +1.5 395,006 + -0.2 395,012 - -0.2 395,014 - -0.5 395,014 - -0.4 395,043 - +1.5 395,081 + +1.8 395,409 + Atu3357 0.15 +0.2 395,419 + Atu3357 0.17 -0.4 395,491 + Atu3357 0.25 -0.9 395,511 + Atu3357 0.28 +0.0 395,519 - Atu3357 0.29 -1.2 395,519 - Atu3357 0.29 -0.6 395,526 + Atu3357 0.29 -1.6 395,540 + Atu3357 0.31 -0.1 395,542 + Atu3357 0.31 +0.7 395,708 + Atu3357 0.51 -0.3 395,742 + Atu3357 0.55 -0.1 395,778 + Atu3357 0.59 -0.3 395,781 - Atu3357 0.60 -0.0 395,785 + Atu3357 0.60 -1.8 395,785 + Atu3357 0.60 +1.5 395,785 + Atu3357 0.60 +0.1 395,785 + Atu3357 0.60 -0.3 395,793 - Atu3357 0.61 +0.8 395,793 - Atu3357 0.61 +0.1 395,793 - Atu3357 0.61 +0.3 395,793 - Atu3357 0.61 -1.5 395,793 - Atu3357 0.61 +1.4 395,793 - Atu3357 0.61 +0.3 395,867 + Atu3357 0.70 -1.4 395,882 + Atu3357 0.72 -0.2 395,882 + Atu3357 0.72 +0.5 395,882 + Atu3357 0.72 +0.5 395,882 + Atu3357 0.72 +1.0 395,882 + Atu3357 0.72 -1.8 395,887 + Atu3357 0.72 -0.3 395,978 - Atu3357 0.83 -1.5 395,979 - Atu3357 0.83 -0.0
Or see this region's nucleotide sequence