Strain Fitness in Agrobacterium fabrum C58 around Atu3354

Experiment: DL-2-Aminobutyric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3353 and Atu3354 are separated by 280 nucleotidesAtu3354 and Atu3355 are separated by 422 nucleotides Atu3353: Atu3353 - mannose-1-phosphate guanylyltransferase, at 387,134 to 388,564 Atu3353 Atu3354: Atu3354 - pyrroloquinoline-quinone-dependent quinate dehydrogenase, at 388,845 to 391,253 Atu3354 Atu3355: Atu3355 - LysR family transcriptional regulator, at 391,676 to 392,575 Atu3355 Position (kb) 388 389 390 391 392Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 387.926 kb on - strand, within Atu3353at 387.926 kb on - strand, within Atu3353at 387.926 kb on - strand, within Atu3353at 387.926 kb on - strand, within Atu3353at 387.926 kb on - strand, within Atu3353at 387.968 kb on + strand, within Atu3353at 388.031 kb on + strand, within Atu3353at 388.041 kb on + strand, within Atu3353at 388.201 kb on + strand, within Atu3353at 388.302 kb on + strand, within Atu3353at 388.395 kb on + strand, within Atu3353at 388.395 kb on + strand, within Atu3353at 388.428 kb on - strandat 388.500 kb on - strandat 388.503 kb on - strandat 388.610 kb on + strandat 388.846 kb on + strandat 389.118 kb on + strand, within Atu3354at 389.161 kb on + strand, within Atu3354at 389.281 kb on + strand, within Atu3354at 389.301 kb on - strand, within Atu3354at 389.350 kb on + strand, within Atu3354at 389.350 kb on + strand, within Atu3354at 389.373 kb on - strand, within Atu3354at 389.540 kb on - strand, within Atu3354at 389.682 kb on - strand, within Atu3354at 389.687 kb on + strand, within Atu3354at 389.689 kb on + strand, within Atu3354at 389.697 kb on - strand, within Atu3354at 389.728 kb on + strand, within Atu3354at 389.736 kb on + strand, within Atu3354at 389.744 kb on - strand, within Atu3354at 389.755 kb on + strand, within Atu3354at 389.806 kb on + strand, within Atu3354at 389.844 kb on + strand, within Atu3354at 389.844 kb on + strand, within Atu3354at 389.878 kb on - strand, within Atu3354at 389.964 kb on - strand, within Atu3354at 390.040 kb on + strand, within Atu3354at 390.048 kb on - strand, within Atu3354at 390.048 kb on - strand, within Atu3354at 390.048 kb on - strand, within Atu3354at 390.120 kb on - strand, within Atu3354at 390.122 kb on + strand, within Atu3354at 390.215 kb on + strand, within Atu3354at 390.222 kb on + strand, within Atu3354at 390.222 kb on + strand, within Atu3354at 390.230 kb on - strand, within Atu3354at 390.260 kb on - strand, within Atu3354at 390.272 kb on - strand, within Atu3354at 390.274 kb on + strand, within Atu3354at 390.306 kb on - strand, within Atu3354at 390.328 kb on - strand, within Atu3354at 390.341 kb on + strand, within Atu3354at 390.519 kb on + strand, within Atu3354at 390.752 kb on - strand, within Atu3354at 390.752 kb on - strand, within Atu3354at 390.762 kb on + strand, within Atu3354at 390.808 kb on + strand, within Atu3354at 390.815 kb on + strand, within Atu3354at 390.878 kb on - strand, within Atu3354at 390.959 kb on + strand, within Atu3354at 390.959 kb on - strand, within Atu3354at 391.038 kb on - strandat 391.138 kb on + strandat 391.188 kb on + strandat 391.239 kb on + strandat 391.309 kb on + strandat 391.317 kb on - strandat 391.406 kb on + strandat 391.408 kb on + strandat 391.414 kb on - strandat 391.472 kb on - strandat 391.490 kb on + strandat 391.573 kb on + strandat 391.639 kb on - strandat 391.737 kb on + strandat 391.767 kb on + strand, within Atu3355at 391.775 kb on - strand, within Atu3355at 391.775 kb on - strand, within Atu3355at 391.777 kb on + strand, within Atu3355at 391.807 kb on - strand, within Atu3355at 391.878 kb on - strand, within Atu3355at 392.024 kb on + strand, within Atu3355at 392.034 kb on - strand, within Atu3355at 392.048 kb on + strand, within Atu3355at 392.162 kb on + strand, within Atu3355at 392.180 kb on - strand, within Atu3355at 392.192 kb on - strand, within Atu3355at 392.194 kb on + strand, within Atu3355at 392.194 kb on + strand, within Atu3355

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Per-strain Table

Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N)
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387,926 - Atu3353 0.55 +0.7
387,926 - Atu3353 0.55 -0.5
387,926 - Atu3353 0.55 +1.4
387,926 - Atu3353 0.55 -0.7
387,926 - Atu3353 0.55 +1.2
387,968 + Atu3353 0.58 -0.4
388,031 + Atu3353 0.63 -1.2
388,041 + Atu3353 0.63 -0.5
388,201 + Atu3353 0.75 +1.8
388,302 + Atu3353 0.82 -0.1
388,395 + Atu3353 0.88 -0.6
388,395 + Atu3353 0.88 -1.5
388,428 - +1.4
388,500 - -1.3
388,503 - +0.3
388,610 + -0.2
388,846 + -1.2
389,118 + Atu3354 0.11 +2.0
389,161 + Atu3354 0.13 +0.3
389,281 + Atu3354 0.18 -0.7
389,301 - Atu3354 0.19 -1.2
389,350 + Atu3354 0.21 +0.3
389,350 + Atu3354 0.21 -1.2
389,373 - Atu3354 0.22 -0.9
389,540 - Atu3354 0.29 -0.1
389,682 - Atu3354 0.35 +0.1
389,687 + Atu3354 0.35 +1.0
389,689 + Atu3354 0.35 -0.3
389,697 - Atu3354 0.35 -0.8
389,728 + Atu3354 0.37 -1.3
389,736 + Atu3354 0.37 +0.9
389,744 - Atu3354 0.37 -0.9
389,755 + Atu3354 0.38 +2.5
389,806 + Atu3354 0.40 -1.3
389,844 + Atu3354 0.41 -1.3
389,844 + Atu3354 0.41 -0.3
389,878 - Atu3354 0.43 +0.0
389,964 - Atu3354 0.46 +0.7
390,040 + Atu3354 0.50 +1.2
390,048 - Atu3354 0.50 -0.8
390,048 - Atu3354 0.50 -0.4
390,048 - Atu3354 0.50 +2.9
390,120 - Atu3354 0.53 -0.8
390,122 + Atu3354 0.53 -0.9
390,215 + Atu3354 0.57 +0.0
390,222 + Atu3354 0.57 -0.6
390,222 + Atu3354 0.57 +0.9
390,230 - Atu3354 0.57 -0.1
390,260 - Atu3354 0.59 +0.6
390,272 - Atu3354 0.59 +0.0
390,274 + Atu3354 0.59 -0.6
390,306 - Atu3354 0.61 +0.1
390,328 - Atu3354 0.62 -1.2
390,341 + Atu3354 0.62 +1.5
390,519 + Atu3354 0.69 +2.5
390,752 - Atu3354 0.79 -0.3
390,752 - Atu3354 0.79 -0.6
390,762 + Atu3354 0.80 +1.9
390,808 + Atu3354 0.81 -0.1
390,815 + Atu3354 0.82 -1.1
390,878 - Atu3354 0.84 +0.4
390,959 + Atu3354 0.88 -0.4
390,959 - Atu3354 0.88 +0.1
391,038 - +0.9
391,138 + -2.1
391,188 + -0.1
391,239 + +4.2
391,309 + -1.5
391,317 - -0.8
391,406 + +2.6
391,408 + -0.0
391,414 - -0.6
391,472 - -0.6
391,490 + +0.5
391,573 + +3.5
391,639 - -0.0
391,737 + +0.2
391,767 + Atu3355 0.10 -0.4
391,775 - Atu3355 0.11 +0.2
391,775 - Atu3355 0.11 +0.9
391,777 + Atu3355 0.11 +1.3
391,807 - Atu3355 0.15 -0.3
391,878 - Atu3355 0.22 -0.1
392,024 + Atu3355 0.39 -0.5
392,034 - Atu3355 0.40 +1.6
392,048 + Atu3355 0.41 -0.9
392,162 + Atu3355 0.54 +0.0
392,180 - Atu3355 0.56 +0.1
392,192 - Atu3355 0.57 +1.2
392,194 + Atu3355 0.58 -2.1
392,194 + Atu3355 0.58 -0.2

Or see this region's nucleotide sequence