Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3283 and Atu3284 are separated by 4 nucleotides Atu3284 and Atu3285 are separated by 11 nucleotides
Atu3283: Atu3283 - sugar ABC transporter permease, at 308,758 to 309,684
Atu3283
Atu3284: Atu3284 - sugar ABC transporter permease, at 309,689 to 310,546
Atu3284
Atu3285: Atu3285 - alpha-glucosidase, at 310,558 to 312,552
Atu3285
Position (kb) 309
310
311 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 308.724 kb on + strand at 308.759 kb on - strand at 308.770 kb on + strand at 308.911 kb on + strand, within Atu3283 at 308.918 kb on - strand, within Atu3283 at 308.924 kb on + strand, within Atu3283 at 308.940 kb on + strand, within Atu3283 at 308.942 kb on + strand, within Atu3283 at 308.942 kb on + strand, within Atu3283 at 308.948 kb on - strand, within Atu3283 at 308.948 kb on - strand, within Atu3283 at 308.950 kb on - strand, within Atu3283 at 308.950 kb on - strand, within Atu3283 at 309.053 kb on - strand, within Atu3283 at 309.066 kb on + strand, within Atu3283 at 309.080 kb on + strand, within Atu3283 at 309.080 kb on + strand, within Atu3283 at 309.080 kb on + strand, within Atu3283 at 309.081 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.088 kb on - strand, within Atu3283 at 309.102 kb on + strand, within Atu3283 at 309.136 kb on + strand, within Atu3283 at 309.164 kb on + strand, within Atu3283 at 309.172 kb on + strand, within Atu3283 at 309.213 kb on + strand, within Atu3283 at 309.223 kb on + strand, within Atu3283 at 309.223 kb on + strand, within Atu3283 at 309.385 kb on + strand, within Atu3283 at 309.446 kb on - strand, within Atu3283 at 309.502 kb on - strand, within Atu3283 at 309.550 kb on - strand, within Atu3283 at 309.556 kb on + strand, within Atu3283 at 309.567 kb on + strand, within Atu3283 at 309.573 kb on - strand, within Atu3283 at 309.575 kb on - strand, within Atu3283 at 309.609 kb on - strand at 309.678 kb on + strand at 309.694 kb on - strand at 309.721 kb on - strand at 309.833 kb on - strand, within Atu3284 at 309.845 kb on - strand, within Atu3284 at 309.923 kb on + strand, within Atu3284 at 309.923 kb on - strand, within Atu3284 at 309.944 kb on + strand, within Atu3284 at 309.957 kb on - strand, within Atu3284 at 310.019 kb on - strand, within Atu3284 at 310.123 kb on - strand, within Atu3284 at 310.141 kb on - strand, within Atu3284 at 310.144 kb on + strand, within Atu3284 at 310.152 kb on - strand, within Atu3284 at 310.152 kb on - strand, within Atu3284 at 310.154 kb on + strand, within Atu3284 at 310.163 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.264 kb on + strand, within Atu3284 at 310.272 kb on - strand, within Atu3284 at 310.272 kb on - strand, within Atu3284 at 310.332 kb on + strand, within Atu3284 at 310.342 kb on + strand, within Atu3284 at 310.359 kb on + strand, within Atu3284 at 310.511 kb on + strand at 310.541 kb on + strand at 310.548 kb on + strand at 310.556 kb on - strand at 310.701 kb on + strand at 310.714 kb on - strand at 310.716 kb on - strand at 310.718 kb on + strand at 310.723 kb on + strand at 310.731 kb on - strand at 310.831 kb on + strand, within Atu3285 at 310.981 kb on - strand, within Atu3285 at 311.011 kb on - strand, within Atu3285 at 311.066 kb on + strand, within Atu3285 at 311.124 kb on - strand, within Atu3285 at 311.154 kb on + strand, within Atu3285 at 311.263 kb on + strand, within Atu3285 at 311.320 kb on + strand, within Atu3285 at 311.372 kb on + strand, within Atu3285 at 311.373 kb on + strand, within Atu3285 at 311.380 kb on - strand, within Atu3285 at 311.391 kb on - strand, within Atu3285 at 311.441 kb on + strand, within Atu3285 at 311.441 kb on + strand, within Atu3285 at 311.449 kb on - strand, within Atu3285 at 311.449 kb on - strand, within Atu3285
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 308,724 + -0.9 308,759 - -1.0 308,770 + -0.4 308,911 + Atu3283 0.17 +3.3 308,918 - Atu3283 0.17 +0.2 308,924 + Atu3283 0.18 -0.4 308,940 + Atu3283 0.20 +1.9 308,942 + Atu3283 0.20 -0.9 308,942 + Atu3283 0.20 -0.2 308,948 - Atu3283 0.20 -0.6 308,948 - Atu3283 0.20 -0.6 308,950 - Atu3283 0.21 -0.9 308,950 - Atu3283 0.21 +0.6 309,053 - Atu3283 0.32 -0.9 309,066 + Atu3283 0.33 +0.1 309,080 + Atu3283 0.35 +0.2 309,080 + Atu3283 0.35 +1.1 309,080 + Atu3283 0.35 -0.2 309,081 - Atu3283 0.35 -0.1 309,088 - Atu3283 0.36 +0.4 309,088 - Atu3283 0.36 +1.8 309,088 - Atu3283 0.36 -1.3 309,088 - Atu3283 0.36 -0.2 309,102 + Atu3283 0.37 -1.1 309,136 + Atu3283 0.41 +0.2 309,164 + Atu3283 0.44 +0.4 309,172 + Atu3283 0.45 -2.0 309,213 + Atu3283 0.49 +1.3 309,223 + Atu3283 0.50 -0.5 309,223 + Atu3283 0.50 -0.8 309,385 + Atu3283 0.68 +0.0 309,446 - Atu3283 0.74 +0.1 309,502 - Atu3283 0.80 -0.6 309,550 - Atu3283 0.85 -0.2 309,556 + Atu3283 0.86 -0.2 309,567 + Atu3283 0.87 -0.4 309,573 - Atu3283 0.88 -0.1 309,575 - Atu3283 0.88 +0.3 309,609 - +0.5 309,678 + -1.1 309,694 - -0.4 309,721 - +0.5 309,833 - Atu3284 0.17 -1.6 309,845 - Atu3284 0.18 -0.7 309,923 + Atu3284 0.27 -0.7 309,923 - Atu3284 0.27 -0.4 309,944 + Atu3284 0.30 -0.5 309,957 - Atu3284 0.31 +0.5 310,019 - Atu3284 0.38 -0.5 310,123 - Atu3284 0.51 +0.3 310,141 - Atu3284 0.53 -0.1 310,144 + Atu3284 0.53 +1.0 310,152 - Atu3284 0.54 +0.3 310,152 - Atu3284 0.54 -1.8 310,154 + Atu3284 0.54 +1.6 310,163 + Atu3284 0.55 -0.7 310,264 + Atu3284 0.67 -1.4 310,264 + Atu3284 0.67 -0.6 310,264 + Atu3284 0.67 -0.9 310,264 + Atu3284 0.67 -1.1 310,264 + Atu3284 0.67 -0.9 310,272 - Atu3284 0.68 +0.2 310,272 - Atu3284 0.68 +0.0 310,332 + Atu3284 0.75 -0.6 310,342 + Atu3284 0.76 +1.5 310,359 + Atu3284 0.78 +0.2 310,511 + -0.2 310,541 + +0.6 310,548 + +5.3 310,556 - -1.1 310,701 + +1.6 310,714 - +0.1 310,716 - -0.3 310,718 + -0.8 310,723 + -1.6 310,731 - +1.3 310,831 + Atu3285 0.14 +1.1 310,981 - Atu3285 0.21 +5.5 311,011 - Atu3285 0.23 +0.1 311,066 + Atu3285 0.25 +0.4 311,124 - Atu3285 0.28 -0.2 311,154 + Atu3285 0.30 +2.6 311,263 + Atu3285 0.35 +0.9 311,320 + Atu3285 0.38 +1.1 311,372 + Atu3285 0.41 +0.6 311,373 + Atu3285 0.41 -1.0 311,380 - Atu3285 0.41 -0.5 311,391 - Atu3285 0.42 +2.5 311,441 + Atu3285 0.44 -0.7 311,441 + Atu3285 0.44 +2.0 311,449 - Atu3285 0.45 -0.6 311,449 - Atu3285 0.45 +0.6
Or see this region's nucleotide sequence