Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3274 and Atu3275 overlap by 4 nucleotides Atu3275 and Atu3276 overlap by 1 nucleotides Atu3276 and Atu3277 are separated by 173 nucleotides Atu3277 and Atu3278 overlap by 1 nucleotides
Atu3274: Atu3274 - AcrB/AcrD/AcrF family protein, at 294,591 to 297,731
Atu3274
Atu3275: Atu3275 - invasion associated protein B, at 297,728 to 298,306
Atu3275
Atu3276: Atu3276 - hypothetical protein, at 298,306 to 302,331
Atu3276
Atu3277: Atu3277 - nitrilotriacetate monooxygenase, at 302,505 to 303,029
Atu3277
Atu3278: Atu3278 - aryl-alcohol dehydrogenase, at 303,029 to 303,922
Atu3278
Position (kb) 298
299
300
301
302
303 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 297.340 kb on - strand, within Atu3274 at 297.383 kb on - strand, within Atu3274 at 297.494 kb on - strand at 297.517 kb on + strand at 297.517 kb on + strand at 297.597 kb on + strand at 297.640 kb on - strand at 297.671 kb on + strand at 297.676 kb on + strand at 297.801 kb on - strand, within Atu3275 at 297.832 kb on - strand, within Atu3275 at 297.880 kb on + strand, within Atu3275 at 297.901 kb on + strand, within Atu3275 at 297.906 kb on + strand, within Atu3275 at 297.914 kb on - strand, within Atu3275 at 297.919 kb on - strand, within Atu3275 at 297.956 kb on - strand, within Atu3275 at 298.005 kb on - strand, within Atu3275 at 298.005 kb on - strand, within Atu3275 at 298.082 kb on - strand, within Atu3275 at 298.174 kb on - strand, within Atu3275 at 298.242 kb on - strand, within Atu3275 at 298.337 kb on + strand at 298.404 kb on + strand at 298.406 kb on + strand at 298.424 kb on - strand at 298.454 kb on - strand at 298.504 kb on - strand at 298.529 kb on + strand at 298.626 kb on + strand at 298.665 kb on + strand at 298.698 kb on - strand at 298.724 kb on - strand, within Atu3276 at 298.757 kb on + strand, within Atu3276 at 298.774 kb on + strand, within Atu3276 at 298.811 kb on - strand, within Atu3276 at 298.922 kb on - strand, within Atu3276 at 298.922 kb on - strand, within Atu3276 at 298.956 kb on + strand, within Atu3276 at 298.956 kb on + strand, within Atu3276 at 298.972 kb on + strand, within Atu3276 at 299.078 kb on + strand, within Atu3276 at 299.157 kb on - strand, within Atu3276 at 299.205 kb on + strand, within Atu3276 at 299.243 kb on - strand, within Atu3276 at 299.268 kb on - strand, within Atu3276 at 299.339 kb on - strand, within Atu3276 at 299.339 kb on - strand, within Atu3276 at 299.589 kb on + strand, within Atu3276 at 299.597 kb on - strand, within Atu3276 at 299.634 kb on + strand, within Atu3276 at 299.636 kb on - strand, within Atu3276 at 299.678 kb on - strand, within Atu3276 at 300.186 kb on + strand, within Atu3276 at 300.187 kb on + strand, within Atu3276 at 300.253 kb on + strand, within Atu3276 at 300.261 kb on - strand, within Atu3276 at 300.346 kb on + strand, within Atu3276 at 300.451 kb on + strand, within Atu3276 at 300.454 kb on - strand, within Atu3276 at 300.459 kb on - strand, within Atu3276 at 300.504 kb on + strand, within Atu3276 at 300.606 kb on + strand, within Atu3276 at 300.614 kb on - strand, within Atu3276 at 300.657 kb on - strand, within Atu3276 at 300.680 kb on - strand, within Atu3276 at 300.708 kb on + strand, within Atu3276 at 300.824 kb on - strand, within Atu3276 at 301.017 kb on + strand, within Atu3276 at 301.032 kb on + strand, within Atu3276 at 301.038 kb on + strand, within Atu3276 at 301.046 kb on - strand, within Atu3276 at 301.061 kb on + strand, within Atu3276 at 301.069 kb on - strand, within Atu3276 at 301.074 kb on - strand, within Atu3276 at 301.128 kb on + strand, within Atu3276 at 301.136 kb on - strand, within Atu3276 at 301.174 kb on - strand, within Atu3276 at 301.175 kb on + strand, within Atu3276 at 301.249 kb on + strand, within Atu3276 at 301.348 kb on - strand, within Atu3276 at 301.386 kb on + strand, within Atu3276 at 301.423 kb on + strand, within Atu3276 at 301.423 kb on + strand, within Atu3276 at 301.473 kb on + strand, within Atu3276 at 301.523 kb on - strand, within Atu3276 at 301.562 kb on + strand, within Atu3276 at 301.570 kb on - strand, within Atu3276 at 301.601 kb on + strand, within Atu3276 at 301.609 kb on - strand, within Atu3276 at 301.612 kb on - strand, within Atu3276 at 301.614 kb on - strand, within Atu3276 at 301.622 kb on - strand, within Atu3276 at 301.635 kb on - strand, within Atu3276 at 301.635 kb on - strand, within Atu3276 at 301.743 kb on - strand, within Atu3276 at 301.763 kb on - strand, within Atu3276 at 301.790 kb on - strand, within Atu3276 at 301.800 kb on + strand, within Atu3276 at 301.855 kb on + strand, within Atu3276 at 301.938 kb on + strand at 301.959 kb on + strand at 301.986 kb on + strand at 302.024 kb on + strand at 302.024 kb on + strand at 302.024 kb on - strand at 302.032 kb on - strand at 302.092 kb on - strand at 302.102 kb on - strand at 302.104 kb on + strand at 302.112 kb on - strand at 302.114 kb on + strand at 302.114 kb on + strand at 302.122 kb on - strand at 302.122 kb on - strand at 302.122 kb on - strand at 302.234 kb on + strand at 302.242 kb on + strand at 302.250 kb on - strand at 302.300 kb on - strand at 302.442 kb on - strand at 302.447 kb on + strand at 302.488 kb on + strand at 302.503 kb on + strand at 302.503 kb on + strand at 302.511 kb on - strand at 302.511 kb on - strand at 302.582 kb on - strand, within Atu3277 at 302.591 kb on + strand, within Atu3277 at 302.612 kb on + strand, within Atu3277 at 302.668 kb on - strand, within Atu3277 at 302.807 kb on + strand, within Atu3277 at 302.926 kb on - strand, within Atu3277 at 302.935 kb on + strand, within Atu3277 at 303.064 kb on + strand at 303.064 kb on - strand at 303.064 kb on - strand at 303.081 kb on - strand at 303.122 kb on - strand, within Atu3278 at 303.183 kb on - strand, within Atu3278 at 303.214 kb on + strand, within Atu3278 at 303.261 kb on + strand, within Atu3278 at 303.261 kb on + strand, within Atu3278 at 303.296 kb on + strand, within Atu3278 at 303.304 kb on - strand, within Atu3278
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 297,340 - Atu3274 0.88 +0.5 297,383 - Atu3274 0.89 -0.4 297,494 - -1.1 297,517 + -0.5 297,517 + +1.7 297,597 + -1.1 297,640 - +0.8 297,671 + -0.2 297,676 + -0.2 297,801 - Atu3275 0.13 -0.2 297,832 - Atu3275 0.18 -1.2 297,880 + Atu3275 0.26 -0.7 297,901 + Atu3275 0.30 +1.6 297,906 + Atu3275 0.31 -0.2 297,914 - Atu3275 0.32 +1.2 297,919 - Atu3275 0.33 +1.2 297,956 - Atu3275 0.39 +0.3 298,005 - Atu3275 0.48 +0.7 298,005 - Atu3275 0.48 +0.2 298,082 - Atu3275 0.61 -0.8 298,174 - Atu3275 0.77 +0.1 298,242 - Atu3275 0.89 -0.2 298,337 + -0.2 298,404 + -0.6 298,406 + +0.3 298,424 - +0.5 298,454 - +0.3 298,504 - +2.3 298,529 + -0.5 298,626 + +1.0 298,665 + -1.2 298,698 - +0.8 298,724 - Atu3276 0.10 +4.1 298,757 + Atu3276 0.11 +2.7 298,774 + Atu3276 0.12 -0.9 298,811 - Atu3276 0.13 +2.0 298,922 - Atu3276 0.15 +1.7 298,922 - Atu3276 0.15 -0.1 298,956 + Atu3276 0.16 +1.2 298,956 + Atu3276 0.16 +0.2 298,972 + Atu3276 0.17 +0.4 299,078 + Atu3276 0.19 +0.2 299,157 - Atu3276 0.21 -0.7 299,205 + Atu3276 0.22 +0.0 299,243 - Atu3276 0.23 +0.1 299,268 - Atu3276 0.24 -0.2 299,339 - Atu3276 0.26 -1.4 299,339 - Atu3276 0.26 -0.2 299,589 + Atu3276 0.32 -1.4 299,597 - Atu3276 0.32 +0.2 299,634 + Atu3276 0.33 -1.7 299,636 - Atu3276 0.33 -0.3 299,678 - Atu3276 0.34 +0.1 300,186 + Atu3276 0.47 +0.6 300,187 + Atu3276 0.47 -1.9 300,253 + Atu3276 0.48 +0.9 300,261 - Atu3276 0.49 +2.4 300,346 + Atu3276 0.51 +1.9 300,451 + Atu3276 0.53 -0.2 300,454 - Atu3276 0.53 +1.2 300,459 - Atu3276 0.53 -0.6 300,504 + Atu3276 0.55 -1.3 300,606 + Atu3276 0.57 -0.8 300,614 - Atu3276 0.57 -0.1 300,657 - Atu3276 0.58 -1.0 300,680 - Atu3276 0.59 +0.1 300,708 + Atu3276 0.60 +1.9 300,824 - Atu3276 0.63 +1.2 301,017 + Atu3276 0.67 +0.3 301,032 + Atu3276 0.68 +0.7 301,038 + Atu3276 0.68 -1.8 301,046 - Atu3276 0.68 +0.0 301,061 + Atu3276 0.68 +1.0 301,069 - Atu3276 0.69 -0.3 301,074 - Atu3276 0.69 -0.7 301,128 + Atu3276 0.70 +1.4 301,136 - Atu3276 0.70 -1.1 301,174 - Atu3276 0.71 -0.4 301,175 + Atu3276 0.71 -1.2 301,249 + Atu3276 0.73 -0.8 301,348 - Atu3276 0.76 -1.4 301,386 + Atu3276 0.77 +0.5 301,423 + Atu3276 0.77 -0.3 301,423 + Atu3276 0.77 -0.7 301,473 + Atu3276 0.79 -2.2 301,523 - Atu3276 0.80 +0.0 301,562 + Atu3276 0.81 +1.2 301,570 - Atu3276 0.81 -0.5 301,601 + Atu3276 0.82 -0.3 301,609 - Atu3276 0.82 +0.1 301,612 - Atu3276 0.82 +1.2 301,614 - Atu3276 0.82 +2.5 301,622 - Atu3276 0.82 +0.3 301,635 - Atu3276 0.83 -0.9 301,635 - Atu3276 0.83 +1.4 301,743 - Atu3276 0.85 +5.3 301,763 - Atu3276 0.86 -1.1 301,790 - Atu3276 0.87 +0.7 301,800 + Atu3276 0.87 -1.5 301,855 + Atu3276 0.88 -0.2 301,938 + -0.4 301,959 + -3.0 301,986 + -0.3 302,024 + +1.9 302,024 + -0.7 302,024 - +0.1 302,032 - -0.1 302,092 - -1.1 302,102 - -0.7 302,104 + -0.3 302,112 - +0.5 302,114 + +0.0 302,114 + +0.1 302,122 - +0.0 302,122 - +1.2 302,122 - -0.8 302,234 + +0.7 302,242 + +0.0 302,250 - -0.9 302,300 - -0.4 302,442 - +0.9 302,447 + +0.1 302,488 + -0.5 302,503 + +0.5 302,503 + +1.3 302,511 - -1.6 302,511 - +0.4 302,582 - Atu3277 0.15 +0.3 302,591 + Atu3277 0.16 +0.5 302,612 + Atu3277 0.20 +2.5 302,668 - Atu3277 0.31 -0.1 302,807 + Atu3277 0.58 -1.6 302,926 - Atu3277 0.80 +0.2 302,935 + Atu3277 0.82 +0.6 303,064 + +0.4 303,064 - -0.8 303,064 - +0.6 303,081 - -0.2 303,122 - Atu3278 0.10 +1.8 303,183 - Atu3278 0.17 +3.5 303,214 + Atu3278 0.21 +0.7 303,261 + Atu3278 0.26 -0.8 303,261 + Atu3278 0.26 -1.3 303,296 + Atu3278 0.30 -1.0 303,304 - Atu3278 0.31 +3.7
Or see this region's nucleotide sequence