Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8132 and Atu0587 are separated by 183 nucleotides Atu0587 and Atu0588 are separated by 127 nucleotides Atu0588 and Atu0589 are separated by 77 nucleotides Atu0589 and Atu0590 are separated by 17 nucleotides
Atu8132: Atu8132 - hypothetical protein, at 568,924 to 569,457
Atu8132
Atu0587: Atu0587 - teichoic acid biosynthesis protein, at 569,641 to 570,315
Atu0587
Atu0588: Atu0588 - hypothetical protein, at 570,443 to 572,206
Atu0588
Atu0589: Atu0589 - methylenetetrahydrofolate dehydrogenase, at 572,284 to 573,183
Atu0589
Atu0590: Atu0590 - transcriptional regulator repressor, at 573,201 to 574,226
Atu0590
Position (kb) 570
571
572
573 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 569.626 kb on - strand at 569.695 kb on - strand at 569.701 kb on - strand at 569.739 kb on - strand, within Atu0587 at 569.748 kb on + strand, within Atu0587 at 569.773 kb on + strand, within Atu0587 at 569.782 kb on + strand, within Atu0587 at 569.817 kb on + strand, within Atu0587 at 569.820 kb on - strand, within Atu0587 at 569.825 kb on - strand, within Atu0587 at 569.865 kb on + strand, within Atu0587 at 569.958 kb on + strand, within Atu0587 at 569.966 kb on - strand, within Atu0587 at 570.027 kb on - strand, within Atu0587 at 570.101 kb on - strand, within Atu0587 at 570.110 kb on + strand, within Atu0587 at 570.147 kb on + strand, within Atu0587 at 570.187 kb on - strand, within Atu0587 at 570.198 kb on + strand, within Atu0587 at 570.206 kb on - strand, within Atu0587 at 570.265 kb on + strand at 570.348 kb on + strand at 570.398 kb on - strand at 570.445 kb on - strand at 570.446 kb on + strand at 570.637 kb on + strand, within Atu0588 at 570.642 kb on + strand, within Atu0588 at 570.656 kb on + strand, within Atu0588 at 570.664 kb on - strand, within Atu0588 at 570.664 kb on - strand, within Atu0588 at 570.674 kb on - strand, within Atu0588 at 570.800 kb on - strand, within Atu0588 at 570.800 kb on - strand, within Atu0588 at 571.008 kb on + strand, within Atu0588 at 571.030 kb on + strand, within Atu0588 at 571.080 kb on + strand, within Atu0588 at 571.114 kb on - strand, within Atu0588 at 571.118 kb on + strand, within Atu0588 at 571.148 kb on + strand, within Atu0588 at 571.156 kb on - strand, within Atu0588 at 571.199 kb on + strand, within Atu0588 at 571.412 kb on + strand, within Atu0588 at 571.445 kb on + strand, within Atu0588 at 571.469 kb on - strand, within Atu0588 at 571.484 kb on + strand, within Atu0588 at 571.484 kb on + strand, within Atu0588 at 571.495 kb on + strand, within Atu0588 at 571.592 kb on - strand, within Atu0588 at 571.683 kb on + strand, within Atu0588 at 571.691 kb on - strand, within Atu0588 at 571.748 kb on - strand, within Atu0588 at 571.748 kb on - strand, within Atu0588 at 571.748 kb on - strand, within Atu0588 at 571.748 kb on - strand, within Atu0588 at 571.748 kb on - strand, within Atu0588 at 571.748 kb on - strand, within Atu0588 at 571.900 kb on + strand, within Atu0588 at 571.947 kb on - strand, within Atu0588 at 571.979 kb on - strand, within Atu0588 at 571.981 kb on + strand, within Atu0588 at 572.101 kb on + strand at 572.101 kb on + strand at 572.143 kb on - strand at 572.248 kb on + strand at 572.256 kb on - strand at 572.259 kb on + strand at 572.281 kb on - strand at 573.159 kb on + strand at 573.167 kb on - strand at 573.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 569,626 - -0.1 569,695 - +0.4 569,701 - -0.5 569,739 - Atu0587 0.15 +3.5 569,748 + Atu0587 0.16 +0.8 569,773 + Atu0587 0.20 +0.5 569,782 + Atu0587 0.21 -0.6 569,817 + Atu0587 0.26 +0.6 569,820 - Atu0587 0.27 -0.3 569,825 - Atu0587 0.27 +0.1 569,865 + Atu0587 0.33 +3.4 569,958 + Atu0587 0.47 -0.4 569,966 - Atu0587 0.48 -0.5 570,027 - Atu0587 0.57 +1.1 570,101 - Atu0587 0.68 +0.3 570,110 + Atu0587 0.69 +2.8 570,147 + Atu0587 0.75 -1.2 570,187 - Atu0587 0.81 +0.4 570,198 + Atu0587 0.83 +1.4 570,206 - Atu0587 0.84 -0.4 570,265 + -0.1 570,348 + +0.7 570,398 - +0.2 570,445 - +2.4 570,446 + -1.5 570,637 + Atu0588 0.11 +0.1 570,642 + Atu0588 0.11 -0.4 570,656 + Atu0588 0.12 -0.5 570,664 - Atu0588 0.13 +4.2 570,664 - Atu0588 0.13 +1.4 570,674 - Atu0588 0.13 +0.6 570,800 - Atu0588 0.20 +0.2 570,800 - Atu0588 0.20 +0.2 571,008 + Atu0588 0.32 -0.2 571,030 + Atu0588 0.33 +4.0 571,080 + Atu0588 0.36 -0.7 571,114 - Atu0588 0.38 +0.2 571,118 + Atu0588 0.38 -1.0 571,148 + Atu0588 0.40 -0.1 571,156 - Atu0588 0.40 -0.2 571,199 + Atu0588 0.43 +0.5 571,412 + Atu0588 0.55 -0.8 571,445 + Atu0588 0.57 -1.0 571,469 - Atu0588 0.58 -0.3 571,484 + Atu0588 0.59 -0.6 571,484 + Atu0588 0.59 -0.2 571,495 + Atu0588 0.60 +2.5 571,592 - Atu0588 0.65 +0.5 571,683 + Atu0588 0.70 -0.6 571,691 - Atu0588 0.71 +0.1 571,748 - Atu0588 0.74 -0.4 571,748 - Atu0588 0.74 -1.2 571,748 - Atu0588 0.74 +0.6 571,748 - Atu0588 0.74 -1.2 571,748 - Atu0588 0.74 +8.2 571,748 - Atu0588 0.74 +2.4 571,900 + Atu0588 0.83 +0.9 571,947 - Atu0588 0.85 -0.4 571,979 - Atu0588 0.87 +0.1 571,981 + Atu0588 0.87 -0.1 572,101 + +2.6 572,101 + -0.2 572,143 - +1.0 572,248 + +1.5 572,256 - -1.1 572,259 + +0.3 572,281 - +0.0 573,159 + +0.4 573,167 - -0.6 573,167 - -0.5
Or see this region's nucleotide sequence