Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0532 and Atu0533 are separated by 72 nucleotides Atu0533 and Atu0534 are separated by 33 nucleotides Atu0534 and Atu0535 are separated by 63 nucleotides Atu0535 and Atu0536 are separated by 2 nucleotides
Atu0532: Atu0532 - hypothetical protein, at 525,399 to 525,809
Atu0532
Atu0533: Atu0533 - putative inhibitor of septum formation, at 525,882 to 526,505
Atu0533
Atu0534: Atu0534 - translation initiation factor IF-1, at 526,539 to 526,838
Atu0534
Atu0535: Atu0535 - hypothetical protein, at 526,902 to 527,390
Atu0535
Atu0536: Atu0536 - hypothetical protein, at 527,393 to 527,866
Atu0536
Position (kb) 526
527 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 525.569 kb on + strand, within Atu0532 at 525.674 kb on + strand, within Atu0532 at 525.838 kb on + strand at 525.879 kb on + strand at 525.916 kb on - strand at 526.162 kb on + strand, within Atu0533 at 526.280 kb on - strand, within Atu0533 at 526.335 kb on - strand, within Atu0533 at 527.068 kb on - strand, within Atu0535 at 527.103 kb on + strand, within Atu0535 at 527.153 kb on + strand, within Atu0535 at 527.153 kb on + strand, within Atu0535 at 527.161 kb on - strand, within Atu0535 at 527.161 kb on - strand, within Atu0535 at 527.161 kb on - strand, within Atu0535 at 527.161 kb on - strand, within Atu0535 at 527.260 kb on - strand, within Atu0535 at 527.390 kb on + strand at 527.390 kb on + strand at 527.455 kb on + strand, within Atu0536 at 527.550 kb on - strand, within Atu0536 at 527.649 kb on + strand, within Atu0536 at 527.657 kb on - strand, within Atu0536 at 527.657 kb on - strand, within Atu0536 at 527.678 kb on + strand, within Atu0536 at 527.802 kb on + strand, within Atu0536 at 527.802 kb on + strand, within Atu0536 at 527.802 kb on + strand, within Atu0536 at 527.810 kb on - strand, within Atu0536
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 525,569 + Atu0532 0.41 +0.4 525,674 + Atu0532 0.67 -0.4 525,838 + -0.3 525,879 + +0.7 525,916 - +0.6 526,162 + Atu0533 0.45 -1.9 526,280 - Atu0533 0.64 +3.8 526,335 - Atu0533 0.73 -1.7 527,068 - Atu0535 0.34 -0.1 527,103 + Atu0535 0.41 -0.0 527,153 + Atu0535 0.51 +4.3 527,153 + Atu0535 0.51 +3.1 527,161 - Atu0535 0.53 +3.2 527,161 - Atu0535 0.53 +0.1 527,161 - Atu0535 0.53 +1.3 527,161 - Atu0535 0.53 +2.7 527,260 - Atu0535 0.73 +4.6 527,390 + -0.7 527,390 + +1.9 527,455 + Atu0536 0.13 -0.2 527,550 - Atu0536 0.33 +0.1 527,649 + Atu0536 0.54 -0.8 527,657 - Atu0536 0.56 -0.8 527,657 - Atu0536 0.56 -1.0 527,678 + Atu0536 0.60 +0.3 527,802 + Atu0536 0.86 -0.4 527,802 + Atu0536 0.86 -0.1 527,802 + Atu0536 0.86 +1.1 527,810 - Atu0536 0.88 -0.1
Or see this region's nucleotide sequence