Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0504 and Atu8010 are separated by 41 nucleotides Atu8010 and Atu0505 are separated by 35 nucleotides Atu0505 and Atu0506 are separated by 156 nucleotides Atu0506 and Atu0507 are separated by 9 nucleotides Atu0507 and Atu0508 overlap by 4 nucleotides Atu0508 and Atu0509 overlap by 4 nucleotides
Atu0504: Atu0504 - hypothetical protein, at 495,598 to 496,029
Atu0504
Atu8010: Atu8010 - hypothetical protein, at 496,071 to 496,277
Atu8010
Atu0505: Atu0505 - tRNA-Phe, at 496,313 to 496,388
Atu0505
Atu0506: Atu0506 - hypothetical protein, at 496,545 to 497,132
Atu0506
Atu0507: Atu0507 - potassium efflux system protein, at 497,142 to 497,486
Atu0507
Atu0508: Atu0508 - PH Adaption potassium efflux system, at 497,483 to 497,764
Atu0508
Atu0509: Atu0509 - phaE protein, at 497,761 to 498,246
Atu0509
Position (kb) 496
497
498 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 495.583 kb on + strand at 495.583 kb on + strand at 495.583 kb on + strand at 495.591 kb on - strand at 495.591 kb on - strand at 495.591 kb on - strand at 495.591 kb on - strand at 495.681 kb on + strand, within Atu0504 at 495.687 kb on - strand, within Atu0504 at 495.843 kb on + strand, within Atu0504 at 495.906 kb on - strand, within Atu0504 at 496.000 kb on - strand at 496.021 kb on + strand at 496.066 kb on - strand at 496.068 kb on + strand at 496.076 kb on - strand at 496.103 kb on + strand, within Atu8010 at 496.123 kb on + strand, within Atu8010 at 496.178 kb on - strand, within Atu8010 at 496.466 kb on + strand at 496.504 kb on + strand at 496.512 kb on - strand at 496.612 kb on - strand, within Atu0506 at 496.658 kb on - strand, within Atu0506 at 496.663 kb on - strand, within Atu0506 at 496.665 kb on + strand, within Atu0506 at 496.665 kb on + strand, within Atu0506 at 496.673 kb on - strand, within Atu0506 at 496.705 kb on + strand, within Atu0506 at 496.799 kb on - strand, within Atu0506 at 496.809 kb on + strand, within Atu0506 at 496.890 kb on - strand, within Atu0506 at 496.989 kb on + strand, within Atu0506 at 496.994 kb on + strand, within Atu0506 at 497.062 kb on + strand, within Atu0506 at 497.063 kb on + strand, within Atu0506 at 497.087 kb on + strand at 497.109 kb on + strand at 497.131 kb on + strand at 497.192 kb on + strand, within Atu0507 at 497.210 kb on + strand, within Atu0507 at 497.210 kb on + strand, within Atu0507 at 497.307 kb on + strand, within Atu0507 at 497.336 kb on - strand, within Atu0507 at 497.398 kb on + strand, within Atu0507 at 497.419 kb on + strand, within Atu0507 at 497.429 kb on + strand, within Atu0507 at 497.521 kb on + strand, within Atu0508 at 497.521 kb on + strand, within Atu0508 at 497.596 kb on + strand, within Atu0508 at 497.604 kb on - strand, within Atu0508 at 497.629 kb on + strand, within Atu0508 at 497.836 kb on + strand, within Atu0509
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 495,583 + -1.6 495,583 + -0.1 495,583 + -0.3 495,591 - -0.1 495,591 - -1.1 495,591 - +0.2 495,591 - +0.9 495,681 + Atu0504 0.19 -0.9 495,687 - Atu0504 0.21 -0.2 495,843 + Atu0504 0.57 -0.7 495,906 - Atu0504 0.71 +0.4 496,000 - +4.9 496,021 + +0.5 496,066 - +1.1 496,068 + -0.7 496,076 - -0.4 496,103 + Atu8010 0.15 +0.3 496,123 + Atu8010 0.25 +0.8 496,178 - Atu8010 0.52 -0.3 496,466 + -0.3 496,504 + -0.3 496,512 - -0.1 496,612 - Atu0506 0.11 +2.2 496,658 - Atu0506 0.19 +0.7 496,663 - Atu0506 0.20 +2.7 496,665 + Atu0506 0.20 +6.6 496,665 + Atu0506 0.20 +0.5 496,673 - Atu0506 0.22 -0.6 496,705 + Atu0506 0.27 -0.9 496,799 - Atu0506 0.43 +0.6 496,809 + Atu0506 0.45 -0.6 496,890 - Atu0506 0.59 +1.2 496,989 + Atu0506 0.76 -1.2 496,994 + Atu0506 0.76 +0.4 497,062 + Atu0506 0.88 -0.4 497,063 + Atu0506 0.88 +3.4 497,087 + +0.3 497,109 + +0.1 497,131 + +0.5 497,192 + Atu0507 0.14 +0.5 497,210 + Atu0507 0.20 +0.2 497,210 + Atu0507 0.20 -0.2 497,307 + Atu0507 0.48 +0.1 497,336 - Atu0507 0.56 -0.1 497,398 + Atu0507 0.74 -0.3 497,419 + Atu0507 0.80 -0.4 497,429 + Atu0507 0.83 -0.5 497,521 + Atu0508 0.13 -1.1 497,521 + Atu0508 0.13 +0.1 497,596 + Atu0508 0.40 +3.0 497,604 - Atu0508 0.43 +1.1 497,629 + Atu0508 0.52 -0.6 497,836 + Atu0509 0.15 +0.6
Or see this region's nucleotide sequence