Experiment: DL-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0355 and Atu0356 are separated by 186 nucleotides Atu0356 and Atu0357 are separated by 40 nucleotides
Atu0355: Atu0355 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 348,698 to 349,492
Atu0355
Atu0356: Atu0356 - miaB protein, at 349,679 to 351,046
Atu0356
Atu0357: Atu0357 - phosphate starvation inducible protein, at 351,087 to 352,142
Atu0357
Position (kb) 349
350
351
352 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 348.724 kb on - strand at 348.757 kb on - strand at 348.880 kb on - strand, within Atu0355 at 348.882 kb on + strand, within Atu0355 at 348.882 kb on + strand, within Atu0355 at 348.962 kb on - strand, within Atu0355 at 348.995 kb on + strand, within Atu0355 at 349.069 kb on - strand, within Atu0355 at 349.154 kb on - strand, within Atu0355 at 349.261 kb on + strand, within Atu0355 at 349.268 kb on + strand, within Atu0355 at 349.269 kb on - strand, within Atu0355 at 349.269 kb on - strand, within Atu0355 at 349.311 kb on + strand, within Atu0355 at 349.311 kb on + strand, within Atu0355 at 349.327 kb on - strand, within Atu0355 at 349.454 kb on + strand at 349.461 kb on + strand at 349.502 kb on - strand at 349.574 kb on + strand at 349.694 kb on + strand at 349.694 kb on + strand at 349.702 kb on - strand at 349.839 kb on - strand, within Atu0356 at 349.870 kb on + strand, within Atu0356 at 349.919 kb on + strand, within Atu0356 at 349.927 kb on - strand, within Atu0356 at 350.197 kb on + strand, within Atu0356 at 350.211 kb on + strand, within Atu0356 at 350.213 kb on + strand, within Atu0356 at 350.232 kb on + strand, within Atu0356 at 350.240 kb on - strand, within Atu0356 at 350.240 kb on - strand, within Atu0356 at 350.240 kb on - strand, within Atu0356 at 350.312 kb on - strand, within Atu0356 at 350.318 kb on + strand, within Atu0356 at 350.349 kb on - strand, within Atu0356 at 350.383 kb on + strand, within Atu0356 at 350.383 kb on + strand, within Atu0356 at 350.383 kb on + strand, within Atu0356 at 350.391 kb on - strand, within Atu0356 at 350.391 kb on - strand, within Atu0356 at 350.391 kb on - strand, within Atu0356 at 350.422 kb on + strand, within Atu0356 at 350.516 kb on + strand, within Atu0356 at 350.524 kb on - strand, within Atu0356 at 350.529 kb on - strand, within Atu0356 at 350.529 kb on - strand, within Atu0356 at 350.692 kb on + strand, within Atu0356 at 350.741 kb on + strand, within Atu0356 at 350.741 kb on + strand, within Atu0356 at 350.749 kb on - strand, within Atu0356 at 350.796 kb on - strand, within Atu0356 at 350.904 kb on + strand, within Atu0356 at 350.907 kb on - strand, within Atu0356 at 350.943 kb on - strand at 351.040 kb on + strand at 351.040 kb on + strand at 351.263 kb on + strand, within Atu0357 at 351.339 kb on - strand, within Atu0357 at 351.344 kb on + strand, within Atu0357 at 351.352 kb on - strand, within Atu0357 at 351.513 kb on + strand, within Atu0357 at 351.573 kb on + strand, within Atu0357 at 351.573 kb on + strand, within Atu0357 at 351.743 kb on + strand, within Atu0357 at 351.834 kb on - strand, within Atu0357 at 351.864 kb on + strand, within Atu0357 at 351.887 kb on + strand, within Atu0357 at 352.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N) remove 348,724 - -0.8 348,757 - +1.0 348,880 - Atu0355 0.23 -0.2 348,882 + Atu0355 0.23 +0.3 348,882 + Atu0355 0.23 -0.6 348,962 - Atu0355 0.33 +6.8 348,995 + Atu0355 0.37 +0.1 349,069 - Atu0355 0.47 -0.6 349,154 - Atu0355 0.57 +3.0 349,261 + Atu0355 0.71 +0.5 349,268 + Atu0355 0.72 +0.2 349,269 - Atu0355 0.72 -0.6 349,269 - Atu0355 0.72 -1.1 349,311 + Atu0355 0.77 +0.0 349,311 + Atu0355 0.77 -1.2 349,327 - Atu0355 0.79 -0.8 349,454 + +3.2 349,461 + -0.0 349,502 - +3.6 349,574 + +0.2 349,694 + -0.8 349,694 + +3.0 349,702 - -0.2 349,839 - Atu0356 0.12 +2.0 349,870 + Atu0356 0.14 +0.2 349,919 + Atu0356 0.18 +0.5 349,927 - Atu0356 0.18 -0.2 350,197 + Atu0356 0.38 -0.1 350,211 + Atu0356 0.39 -0.6 350,213 + Atu0356 0.39 +0.9 350,232 + Atu0356 0.40 +0.2 350,240 - Atu0356 0.41 +0.6 350,240 - Atu0356 0.41 +0.7 350,240 - Atu0356 0.41 +1.4 350,312 - Atu0356 0.46 +0.6 350,318 + Atu0356 0.47 +2.1 350,349 - Atu0356 0.49 -2.4 350,383 + Atu0356 0.51 -1.5 350,383 + Atu0356 0.51 +1.9 350,383 + Atu0356 0.51 -1.0 350,391 - Atu0356 0.52 +1.3 350,391 - Atu0356 0.52 +0.8 350,391 - Atu0356 0.52 +0.4 350,422 + Atu0356 0.54 +1.4 350,516 + Atu0356 0.61 +3.7 350,524 - Atu0356 0.62 -0.1 350,529 - Atu0356 0.62 +0.8 350,529 - Atu0356 0.62 +3.0 350,692 + Atu0356 0.74 +2.7 350,741 + Atu0356 0.78 +0.0 350,741 + Atu0356 0.78 +0.5 350,749 - Atu0356 0.78 +5.7 350,796 - Atu0356 0.82 +1.3 350,904 + Atu0356 0.90 +0.4 350,907 - Atu0356 0.90 +1.4 350,943 - +0.5 351,040 + +0.2 351,040 + +1.0 351,263 + Atu0357 0.17 +0.3 351,339 - Atu0357 0.24 -0.2 351,344 + Atu0357 0.24 -0.7 351,352 - Atu0357 0.25 -1.2 351,513 + Atu0357 0.40 -0.4 351,573 + Atu0357 0.46 -2.6 351,573 + Atu0357 0.46 -0.3 351,743 + Atu0357 0.62 +1.0 351,834 - Atu0357 0.71 +1.0 351,864 + Atu0357 0.74 -0.2 351,887 + Atu0357 0.76 -0.8 352,045 - +0.8
Or see this region's nucleotide sequence