Strain Fitness in Agrobacterium fabrum C58 around Atu0178

Experiment: DL-2-Aminobutyric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0176 and Atu0177 are separated by 67 nucleotidesAtu0177 and Atu0178 overlap by 4 nucleotidesAtu0178 and Atu0179 are separated by 133 nucleotides Atu0176: Atu0176 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 180,174 to 180,881 Atu0176 Atu0177: Atu0177 - ABC transporter, nucleotide binding/ATPase protein (phosphonate), at 180,949 to 181,725 Atu0177 Atu0178: Atu0178 - hypothetical protein, at 181,722 to 182,624 Atu0178 Atu0179: Atu0179 - hypothetical protein, at 182,758 to 183,867 Atu0179 Position (kb) 181 182 183Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 180.741 kb on + strand, within Atu0176at 181.031 kb on - strand, within Atu0177at 181.078 kb on - strand, within Atu0177at 181.078 kb on - strand, within Atu0177at 181.127 kb on + strand, within Atu0177at 181.146 kb on + strand, within Atu0177at 181.156 kb on - strand, within Atu0177at 181.158 kb on + strand, within Atu0177at 181.373 kb on + strand, within Atu0177at 181.420 kb on - strand, within Atu0177at 181.533 kb on + strand, within Atu0177at 181.553 kb on + strand, within Atu0177at 181.635 kb on + strand, within Atu0177at 181.643 kb on - strand, within Atu0177at 181.754 kb on - strandat 181.835 kb on - strand, within Atu0178at 181.836 kb on + strand, within Atu0178at 181.887 kb on - strand, within Atu0178at 181.901 kb on + strand, within Atu0178at 181.945 kb on + strand, within Atu0178at 181.953 kb on - strand, within Atu0178at 181.958 kb on - strand, within Atu0178at 181.958 kb on - strand, within Atu0178at 181.968 kb on - strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 181.994 kb on + strand, within Atu0178at 182.002 kb on - strand, within Atu0178at 182.002 kb on - strand, within Atu0178at 182.036 kb on - strand, within Atu0178at 182.072 kb on - strand, within Atu0178at 182.088 kb on + strand, within Atu0178at 182.088 kb on + strand, within Atu0178at 182.150 kb on + strand, within Atu0178at 182.150 kb on + strand, within Atu0178at 182.159 kb on + strand, within Atu0178at 182.167 kb on - strand, within Atu0178at 182.167 kb on - strand, within Atu0178at 182.167 kb on - strand, within Atu0178at 182.208 kb on + strand, within Atu0178at 182.238 kb on + strand, within Atu0178at 182.247 kb on - strand, within Atu0178at 182.317 kb on - strand, within Atu0178at 182.332 kb on - strand, within Atu0178at 182.469 kb on + strand, within Atu0178at 182.498 kb on - strand, within Atu0178at 182.580 kb on + strandat 182.628 kb on + strandat 182.649 kb on - strandat 182.948 kb on - strand, within Atu0179at 182.953 kb on - strand, within Atu0179at 183.076 kb on - strand, within Atu0179at 183.088 kb on - strand, within Atu0179at 183.088 kb on - strand, within Atu0179at 183.236 kb on - strand, within Atu0179at 183.446 kb on + strand, within Atu0179at 183.446 kb on - strand, within Atu0179at 183.469 kb on - strand, within Atu0179at 183.479 kb on - strand, within Atu0179at 183.545 kb on - strand, within Atu0179at 183.546 kb on - strand, within Atu0179at 183.566 kb on + strand, within Atu0179at 183.573 kb on + strand, within Atu0179at 183.573 kb on + strand, within Atu0179at 183.623 kb on - strand, within Atu0179

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Per-strain Table

Position Strand Gene LocusTag Fraction DL-2-Aminobutyric (N)
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180,741 + Atu0176 0.80 -0.3
181,031 - Atu0177 0.11 -0.6
181,078 - Atu0177 0.17 +0.6
181,078 - Atu0177 0.17 -0.9
181,127 + Atu0177 0.23 -0.5
181,146 + Atu0177 0.25 -0.4
181,156 - Atu0177 0.27 -0.2
181,158 + Atu0177 0.27 -0.0
181,373 + Atu0177 0.55 -0.1
181,420 - Atu0177 0.61 -0.9
181,533 + Atu0177 0.75 -0.6
181,553 + Atu0177 0.78 +3.3
181,635 + Atu0177 0.88 -0.0
181,643 - Atu0177 0.89 -1.7
181,754 - +1.2
181,835 - Atu0178 0.13 +3.4
181,836 + Atu0178 0.13 -0.5
181,887 - Atu0178 0.18 +0.3
181,901 + Atu0178 0.20 -0.1
181,945 + Atu0178 0.25 -1.1
181,953 - Atu0178 0.26 +0.4
181,958 - Atu0178 0.26 -1.1
181,958 - Atu0178 0.26 +0.1
181,968 - Atu0178 0.27 -0.7
181,994 + Atu0178 0.30 +0.8
181,994 + Atu0178 0.30 +0.0
181,994 + Atu0178 0.30 -0.0
181,994 + Atu0178 0.30 +1.1
182,002 - Atu0178 0.31 +1.3
182,002 - Atu0178 0.31 -0.5
182,036 - Atu0178 0.35 -0.6
182,072 - Atu0178 0.39 +1.2
182,088 + Atu0178 0.41 -1.2
182,088 + Atu0178 0.41 -0.6
182,150 + Atu0178 0.47 +1.8
182,150 + Atu0178 0.47 -0.1
182,159 + Atu0178 0.48 -1.9
182,167 - Atu0178 0.49 +0.8
182,167 - Atu0178 0.49 -0.3
182,167 - Atu0178 0.49 +0.3
182,208 + Atu0178 0.54 -0.0
182,238 + Atu0178 0.57 +0.4
182,247 - Atu0178 0.58 +0.7
182,317 - Atu0178 0.66 -0.6
182,332 - Atu0178 0.68 +0.8
182,469 + Atu0178 0.83 +0.9
182,498 - Atu0178 0.86 +0.2
182,580 + +0.2
182,628 + -0.4
182,649 - +1.5
182,948 - Atu0179 0.17 -0.8
182,953 - Atu0179 0.18 -0.9
183,076 - Atu0179 0.29 +0.0
183,088 - Atu0179 0.30 -0.2
183,088 - Atu0179 0.30 +0.7
183,236 - Atu0179 0.43 +1.1
183,446 + Atu0179 0.62 -1.8
183,446 - Atu0179 0.62 -0.3
183,469 - Atu0179 0.64 -0.6
183,479 - Atu0179 0.65 -1.5
183,545 - Atu0179 0.71 +2.1
183,546 - Atu0179 0.71 +6.3
183,566 + Atu0179 0.73 -0.3
183,573 + Atu0179 0.73 +0.0
183,573 + Atu0179 0.73 +1.7
183,623 - Atu0179 0.78 -1.6

Or see this region's nucleotide sequence