Strain Fitness in Pseudomonas simiae WCS417 around PS417_19415

Experiment: Inosine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_19405 and PS417_19410 are separated by 154 nucleotidesPS417_19410 and PS417_19415 are separated by 396 nucleotidesPS417_19415 and PS417_19420 overlap by 4 nucleotidesPS417_19420 and PS417_19425 are separated by 41 nucleotides PS417_19405: PS417_19405 - hypothetical protein, at 4,204,517 to 4,209,751 _19405 PS417_19410: PS417_19410 - 5-hydroxyisourate hydrolase, at 4,209,906 to 4,210,259 _19410 PS417_19415: PS417_19415 - allantoinase, at 4,210,656 to 4,211,582 _19415 PS417_19420: PS417_19420 - OHCU decarboxylase, at 4,211,579 to 4,212,094 _19420 PS417_19425: PS417_19425 - allantoicase, at 4,212,136 to 4,213,131 _19425 Position (kb) 4210 4211 4212Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4209.679 kb on + strandat 4209.686 kb on + strandat 4209.787 kb on - strandat 4209.813 kb on + strandat 4209.813 kb on + strandat 4209.813 kb on + strandat 4209.814 kb on - strandat 4209.814 kb on - strandat 4209.817 kb on + strandat 4209.817 kb on + strandat 4209.817 kb on + strandat 4209.817 kb on + strandat 4209.817 kb on + strandat 4209.818 kb on - strandat 4209.818 kb on - strandat 4209.818 kb on - strandat 4209.821 kb on + strandat 4209.920 kb on - strandat 4209.928 kb on + strandat 4209.929 kb on - strandat 4210.286 kb on + strandat 4210.612 kb on - strandat 4210.884 kb on + strand, within PS417_19415at 4211.058 kb on + strand, within PS417_19415at 4211.146 kb on - strand, within PS417_19415at 4211.599 kb on + strandat 4211.928 kb on - strand, within PS417_19420at 4211.928 kb on - strand, within PS417_19420at 4211.965 kb on - strand, within PS417_19420at 4211.965 kb on - strand, within PS417_19420at 4212.061 kb on + strandat 4212.061 kb on + strandat 4212.061 kb on + strandat 4212.062 kb on - strandat 4212.146 kb on - strandat 4212.146 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
remove
4,209,679 + -0.3
4,209,686 + -0.2
4,209,787 - +0.7
4,209,813 + -1.3
4,209,813 + -0.2
4,209,813 + -0.2
4,209,814 - +1.1
4,209,814 - +0.5
4,209,817 + -0.7
4,209,817 + -0.3
4,209,817 + -0.4
4,209,817 + +0.1
4,209,817 + -0.6
4,209,818 - -0.2
4,209,818 - +0.6
4,209,818 - +0.4
4,209,821 + +0.0
4,209,920 - -1.2
4,209,928 + -3.2
4,209,929 - -4.0
4,210,286 + -2.3
4,210,612 - -4.1
4,210,884 + PS417_19415 0.25 -4.9
4,211,058 + PS417_19415 0.43 -4.5
4,211,146 - PS417_19415 0.53 -0.4
4,211,599 + -2.7
4,211,928 - PS417_19420 0.68 -2.2
4,211,928 - PS417_19420 0.68 -3.2
4,211,965 - PS417_19420 0.75 -6.1
4,211,965 - PS417_19420 0.75 -3.7
4,212,061 + -3.5
4,212,061 + -2.6
4,212,061 + -0.2
4,212,062 - -1.2
4,212,146 - -3.1
4,212,146 - -3.0

Or see this region's nucleotide sequence