Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0043 and Echvi_0044 are separated by 312 nucleotides Echvi_0044 and Echvi_0045 are separated by 185 nucleotides
Echvi_0043: Echvi_0043 - ABC-type antimicrobial peptide transport system, permease component, at 40,004 to 41,251
_0043
Echvi_0044: Echvi_0044 - protein RecA, at 41,564 to 42,592
_0044
Echvi_0045: Echvi_0045 - Protein of unknown function (DUF3108)., at 42,778 to 43,566
_0045
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.676 kb on + strand, within Echvi_0043 at 40.677 kb on - strand, within Echvi_0043 at 40.679 kb on + strand, within Echvi_0043 at 40.680 kb on - strand, within Echvi_0043 at 40.697 kb on - strand, within Echvi_0043 at 40.697 kb on - strand, within Echvi_0043 at 40.709 kb on - strand, within Echvi_0043 at 40.918 kb on - strand, within Echvi_0043 at 40.940 kb on - strand, within Echvi_0043 at 40.984 kb on - strand, within Echvi_0043 at 41.124 kb on + strand, within Echvi_0043 at 41.125 kb on - strand, within Echvi_0043 at 41.158 kb on - strand at 41.175 kb on + strand at 41.175 kb on + strand at 41.264 kb on + strand at 41.264 kb on + strand at 41.306 kb on + strand at 41.306 kb on + strand at 41.307 kb on - strand at 41.307 kb on - strand at 41.307 kb on - strand at 41.316 kb on + strand at 41.317 kb on - strand at 41.324 kb on - strand at 41.330 kb on + strand at 41.330 kb on + strand at 41.330 kb on + strand at 41.404 kb on + strand at 41.404 kb on + strand at 41.405 kb on - strand at 41.405 kb on - strand at 41.405 kb on - strand at 41.405 kb on - strand at 41.428 kb on - strand at 41.522 kb on - strand at 41.522 kb on - strand at 41.522 kb on - strand at 41.541 kb on + strand at 41.553 kb on + strand at 41.553 kb on + strand at 41.559 kb on - strand at 41.559 kb on - strand at 41.642 kb on + strand at 41.796 kb on + strand, within Echvi_0044 at 41.797 kb on - strand, within Echvi_0044 at 41.800 kb on + strand, within Echvi_0044 at 41.801 kb on - strand, within Echvi_0044 at 41.926 kb on + strand, within Echvi_0044 at 41.937 kb on + strand, within Echvi_0044 at 42.282 kb on + strand, within Echvi_0044 at 42.289 kb on + strand, within Echvi_0044 at 42.545 kb on - strand at 42.593 kb on - strand at 42.593 kb on - strand at 42.593 kb on - strand at 42.595 kb on - strand at 42.595 kb on - strand at 42.623 kb on - strand at 42.713 kb on - strand at 42.715 kb on + strand at 42.717 kb on + strand at 42.717 kb on + strand at 42.718 kb on - strand at 42.718 kb on - strand at 42.718 kb on - strand at 42.740 kb on - strand at 42.775 kb on + strand at 42.775 kb on + strand at 42.778 kb on - strand at 42.791 kb on + strand at 42.829 kb on + strand at 42.858 kb on + strand, within Echvi_0045 at 42.858 kb on + strand, within Echvi_0045 at 42.960 kb on - strand, within Echvi_0045 at 43.005 kb on - strand, within Echvi_0045 at 43.020 kb on - strand, within Echvi_0045 at 43.020 kb on - strand, within Echvi_0045 at 43.023 kb on + strand, within Echvi_0045 at 43.024 kb on - strand, within Echvi_0045 at 43.140 kb on + strand, within Echvi_0045 at 43.191 kb on - strand, within Echvi_0045 at 43.234 kb on - strand, within Echvi_0045 at 43.252 kb on + strand, within Echvi_0045 at 43.253 kb on - strand, within Echvi_0045 at 43.253 kb on - strand, within Echvi_0045 at 43.255 kb on - strand, within Echvi_0045 at 43.255 kb on - strand, within Echvi_0045 at 43.294 kb on - strand, within Echvi_0045 at 43.306 kb on - strand, within Echvi_0045 at 43.330 kb on + strand, within Echvi_0045 at 43.330 kb on + strand, within Echvi_0045 at 43.330 kb on + strand, within Echvi_0045 at 43.331 kb on - strand, within Echvi_0045 at 43.331 kb on - strand, within Echvi_0045 at 43.348 kb on + strand, within Echvi_0045 at 43.430 kb on + strand, within Echvi_0045 at 43.431 kb on - strand, within Echvi_0045 at 43.449 kb on + strand, within Echvi_0045 at 43.450 kb on - strand, within Echvi_0045 at 43.452 kb on + strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.453 kb on - strand, within Echvi_0045 at 43.525 kb on - strand at 43.565 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 40,676 + Echvi_0043 0.54 +0.3 40,677 - Echvi_0043 0.54 -0.7 40,679 + Echvi_0043 0.54 +0.2 40,680 - Echvi_0043 0.54 +0.5 40,697 - Echvi_0043 0.56 +1.3 40,697 - Echvi_0043 0.56 +1.0 40,709 - Echvi_0043 0.56 +0.5 40,918 - Echvi_0043 0.73 -0.1 40,940 - Echvi_0043 0.75 -0.4 40,984 - Echvi_0043 0.79 +0.7 41,124 + Echvi_0043 0.90 -0.0 41,125 - Echvi_0043 0.90 -0.2 41,158 - +2.2 41,175 + -0.8 41,175 + -2.7 41,264 + -1.4 41,264 + +0.7 41,306 + +0.4 41,306 + -0.5 41,307 - -0.4 41,307 - +0.2 41,307 - -0.5 41,316 + +0.8 41,317 - -0.4 41,324 - +1.0 41,330 + +0.0 41,330 + +0.5 41,330 + +1.0 41,404 + +0.5 41,404 + -0.6 41,405 - +0.5 41,405 - +1.4 41,405 - +0.6 41,405 - -0.2 41,428 - -1.4 41,522 - +0.2 41,522 - -1.0 41,522 - -1.4 41,541 + -0.9 41,553 + +0.8 41,553 + +0.6 41,559 - -0.8 41,559 - +1.5 41,642 + -1.0 41,796 + Echvi_0044 0.23 -0.8 41,797 - Echvi_0044 0.23 -1.0 41,800 + Echvi_0044 0.23 -0.8 41,801 - Echvi_0044 0.23 -0.5 41,926 + Echvi_0044 0.35 +1.2 41,937 + Echvi_0044 0.36 +1.4 42,282 + Echvi_0044 0.70 -1.7 42,289 + Echvi_0044 0.70 -2.4 42,545 - -1.0 42,593 - +0.8 42,593 - -1.1 42,593 - +0.5 42,595 - +0.3 42,595 - +0.6 42,623 - -1.4 42,713 - -1.8 42,715 + +0.8 42,717 + +0.5 42,717 + +0.3 42,718 - +0.7 42,718 - +1.9 42,718 - +0.4 42,740 - -1.2 42,775 + +0.7 42,775 + +0.6 42,778 - +1.4 42,791 + -0.3 42,829 + -0.9 42,858 + Echvi_0045 0.10 +0.9 42,858 + Echvi_0045 0.10 +0.2 42,960 - Echvi_0045 0.23 +0.3 43,005 - Echvi_0045 0.29 -1.3 43,020 - Echvi_0045 0.31 -0.9 43,020 - Echvi_0045 0.31 -0.2 43,023 + Echvi_0045 0.31 -0.7 43,024 - Echvi_0045 0.31 +0.8 43,140 + Echvi_0045 0.46 -0.0 43,191 - Echvi_0045 0.52 -0.4 43,234 - Echvi_0045 0.58 -0.5 43,252 + Echvi_0045 0.60 -0.3 43,253 - Echvi_0045 0.60 +2.6 43,253 - Echvi_0045 0.60 +1.0 43,255 - Echvi_0045 0.60 -0.6 43,255 - Echvi_0045 0.60 -0.0 43,294 - Echvi_0045 0.65 +0.0 43,306 - Echvi_0045 0.67 -0.2 43,330 + Echvi_0045 0.70 -0.5 43,330 + Echvi_0045 0.70 -0.6 43,330 + Echvi_0045 0.70 -0.4 43,331 - Echvi_0045 0.70 +0.1 43,331 - Echvi_0045 0.70 -0.8 43,348 + Echvi_0045 0.72 +0.1 43,430 + Echvi_0045 0.83 +0.1 43,431 - Echvi_0045 0.83 -1.9 43,449 + Echvi_0045 0.85 -0.8 43,450 - Echvi_0045 0.85 +0.2 43,452 + Echvi_0045 0.85 -0.9 43,453 - Echvi_0045 0.86 -0.4 43,453 - Echvi_0045 0.86 +0.7 43,525 - +0.7 43,565 - +2.0
Or see this region's nucleotide sequence