Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0039 and Echvi_0040 are separated by 80 nucleotides Echvi_0040 and Echvi_0041 overlap by 56 nucleotides Echvi_0041 and Echvi_0042 are separated by 123 nucleotides Echvi_0042 and Echvi_0043 are separated by 129 nucleotides
Echvi_0039: Echvi_0039 - Predicted membrane protein (DUF2154)., at 37,031 to 37,831
_0039
Echvi_0040: Echvi_0040 - hypothetical protein, at 37,912 to 38,079
_0040
Echvi_0041: Echvi_0041 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 38,024 to 38,701
_0041
Echvi_0042: Echvi_0042 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 38,825 to 39,874
_0042
Echvi_0043: Echvi_0043 - ABC-type antimicrobial peptide transport system, permease component, at 40,004 to 41,251
_0043
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1 at 37.840 kb on + strand at 37.892 kb on + strand at 37.895 kb on - strand at 38.702 kb on - strand at 38.741 kb on + strand at 38.764 kb on + strand at 38.765 kb on - strand at 38.784 kb on + strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.787 kb on - strand at 38.787 kb on - strand at 38.789 kb on - strand at 39.879 kb on - strand at 40.048 kb on - strand at 40.133 kb on - strand, within Echvi_0043 at 40.141 kb on - strand, within Echvi_0043 at 40.254 kb on - strand, within Echvi_0043 at 40.254 kb on - strand, within Echvi_0043 at 40.277 kb on + strand, within Echvi_0043 at 40.277 kb on + strand, within Echvi_0043 at 40.278 kb on - strand, within Echvi_0043 at 40.278 kb on - strand, within Echvi_0043 at 40.327 kb on + strand, within Echvi_0043 at 40.328 kb on - strand, within Echvi_0043 at 40.405 kb on - strand, within Echvi_0043 at 40.405 kb on - strand, within Echvi_0043 at 40.414 kb on + strand, within Echvi_0043 at 40.424 kb on + strand, within Echvi_0043 at 40.425 kb on - strand, within Echvi_0043 at 40.425 kb on - strand, within Echvi_0043 at 40.425 kb on - strand, within Echvi_0043 at 40.428 kb on - strand, within Echvi_0043 at 40.676 kb on + strand, within Echvi_0043 at 40.677 kb on - strand, within Echvi_0043 at 40.679 kb on + strand, within Echvi_0043 at 40.680 kb on - strand, within Echvi_0043 at 40.697 kb on - strand, within Echvi_0043 at 40.697 kb on - strand, within Echvi_0043 at 40.709 kb on - strand, within Echvi_0043
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 37,840 + +0.2 37,892 + +0.5 37,895 - -0.2 38,702 - +0.4 38,741 + +0.8 38,764 + -0.6 38,765 - -0.2 38,784 + +0.3 38,785 - -1.0 38,785 - -0.6 38,785 - +1.1 38,785 - -1.1 38,785 - -1.2 38,786 + +0.5 38,786 + +0.5 38,786 + -0.1 38,787 - +1.5 38,787 - -1.4 38,789 - +0.6 39,879 - +0.0 40,048 - +0.6 40,133 - Echvi_0043 0.10 -1.0 40,141 - Echvi_0043 0.11 -0.7 40,254 - Echvi_0043 0.20 +1.1 40,254 - Echvi_0043 0.20 +0.5 40,277 + Echvi_0043 0.22 -0.3 40,277 + Echvi_0043 0.22 -0.1 40,278 - Echvi_0043 0.22 -0.7 40,278 - Echvi_0043 0.22 -0.8 40,327 + Echvi_0043 0.26 +1.3 40,328 - Echvi_0043 0.26 +0.2 40,405 - Echvi_0043 0.32 -0.3 40,405 - Echvi_0043 0.32 -0.0 40,414 + Echvi_0043 0.33 +1.6 40,424 + Echvi_0043 0.34 +0.8 40,425 - Echvi_0043 0.34 -1.3 40,425 - Echvi_0043 0.34 +0.9 40,425 - Echvi_0043 0.34 +0.1 40,428 - Echvi_0043 0.34 -0.8 40,676 + Echvi_0043 0.54 +0.3 40,677 - Echvi_0043 0.54 -0.7 40,679 + Echvi_0043 0.54 +0.2 40,680 - Echvi_0043 0.54 +0.5 40,697 - Echvi_0043 0.56 +1.3 40,697 - Echvi_0043 0.56 +1.0 40,709 - Echvi_0043 0.56 +0.5
Or see this region's nucleotide sequence