Experiment: 6-aminocaproic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6164 and Atu6165 are separated by 285 nucleotides Atu6165 and Atu6166 are separated by 360 nucleotides
Atu6164: Atu6164 - trans-zeatin secretion protein, at 179,262 to 179,993
Atu6164
Atu6165: Atu6165 - hypothetical protein, at 180,279 to 180,470
Atu6165
Atu6166: Atu6166 - two component sensor kinase, at 180,831 to 183,332
Atu6166
Position (kb) 180
181 Strain fitness (log2 ratio) -1
0
1
2
3 at 179.300 kb on + strand at 179.300 kb on + strand at 179.300 kb on + strand at 179.300 kb on + strand at 179.308 kb on - strand at 179.308 kb on - strand at 179.308 kb on - strand at 179.320 kb on - strand at 179.339 kb on + strand, within Atu6164 at 179.379 kb on - strand, within Atu6164 at 179.379 kb on - strand, within Atu6164 at 179.379 kb on - strand, within Atu6164 at 179.412 kb on - strand, within Atu6164 at 179.498 kb on - strand, within Atu6164 at 179.501 kb on + strand, within Atu6164 at 179.519 kb on - strand, within Atu6164 at 179.520 kb on - strand, within Atu6164 at 179.545 kb on + strand, within Atu6164 at 179.593 kb on - strand, within Atu6164 at 179.595 kb on + strand, within Atu6164 at 179.598 kb on - strand, within Atu6164 at 179.631 kb on + strand, within Atu6164 at 179.651 kb on - strand, within Atu6164 at 179.720 kb on - strand, within Atu6164 at 179.722 kb on + strand, within Atu6164 at 179.723 kb on + strand, within Atu6164 at 179.731 kb on - strand, within Atu6164 at 179.776 kb on + strand, within Atu6164 at 179.791 kb on - strand, within Atu6164 at 179.883 kb on + strand, within Atu6164 at 179.891 kb on - strand, within Atu6164 at 179.891 kb on - strand, within Atu6164 at 179.891 kb on - strand, within Atu6164 at 179.901 kb on - strand, within Atu6164 at 179.902 kb on - strand, within Atu6164 at 179.903 kb on - strand, within Atu6164 at 179.969 kb on + strand at 180.038 kb on - strand at 180.161 kb on + strand at 180.170 kb on + strand at 180.205 kb on + strand at 180.205 kb on - strand at 180.220 kb on - strand at 180.233 kb on + strand at 180.254 kb on - strand at 180.258 kb on + strand at 180.293 kb on + strand at 180.329 kb on - strand, within Atu6165 at 180.393 kb on + strand, within Atu6165 at 180.464 kb on + strand at 180.464 kb on + strand at 180.464 kb on + strand at 180.488 kb on + strand at 180.535 kb on + strand at 180.535 kb on + strand at 180.557 kb on - strand at 180.567 kb on - strand at 180.590 kb on - strand at 180.624 kb on + strand at 180.632 kb on - strand at 180.638 kb on + strand at 180.642 kb on + strand at 180.661 kb on + strand at 180.670 kb on - strand at 180.675 kb on - strand at 180.692 kb on - strand at 180.778 kb on + strand at 180.785 kb on + strand at 180.786 kb on - strand at 180.786 kb on - strand at 180.786 kb on - strand at 180.793 kb on + strand at 180.793 kb on + strand at 180.793 kb on + strand at 180.793 kb on + strand at 180.801 kb on - strand at 180.801 kb on - strand at 180.801 kb on - strand at 180.834 kb on + strand at 180.842 kb on - strand at 180.850 kb on - strand at 180.863 kb on + strand at 180.873 kb on + strand at 180.881 kb on + strand at 180.889 kb on - strand at 180.889 kb on - strand at 180.889 kb on - strand at 180.889 kb on - strand at 180.891 kb on + strand at 180.891 kb on + strand at 180.891 kb on + strand at 180.891 kb on + strand at 180.891 kb on + strand at 180.899 kb on - strand at 180.899 kb on - strand at 180.906 kb on - strand at 180.943 kb on - strand at 180.945 kb on + strand at 180.991 kb on + strand at 181.009 kb on - strand at 181.021 kb on + strand at 181.021 kb on + strand at 181.023 kb on + strand at 181.031 kb on - strand at 181.031 kb on - strand at 181.031 kb on - strand at 181.058 kb on + strand at 181.129 kb on - strand, within Atu6166 at 181.174 kb on + strand, within Atu6166 at 181.174 kb on + strand, within Atu6166 at 181.174 kb on + strand, within Atu6166 at 181.174 kb on + strand, within Atu6166 at 181.174 kb on + strand, within Atu6166 at 181.174 kb on + strand, within Atu6166 at 181.174 kb on + strand, within Atu6166 at 181.182 kb on - strand, within Atu6166 at 181.182 kb on - strand, within Atu6166 at 181.182 kb on - strand, within Atu6166 at 181.182 kb on - strand, within Atu6166 at 181.210 kb on + strand, within Atu6166 at 181.336 kb on + strand, within Atu6166 at 181.336 kb on + strand, within Atu6166 at 181.344 kb on - strand, within Atu6166 at 181.357 kb on - strand, within Atu6166 at 181.361 kb on + strand, within Atu6166 at 181.366 kb on + strand, within Atu6166 at 181.366 kb on + strand, within Atu6166 at 181.371 kb on + strand, within Atu6166 at 181.374 kb on - strand, within Atu6166 at 181.434 kb on - strand, within Atu6166 at 181.442 kb on - strand, within Atu6166
Per-strain Table
Position Strand Gene LocusTag Fraction 6-aminocaproic (N) remove 179,300 + +0.3 179,300 + +0.7 179,300 + +0.7 179,300 + -0.6 179,308 - +0.8 179,308 - +2.3 179,308 - +0.8 179,320 - +1.3 179,339 + Atu6164 0.11 +0.1 179,379 - Atu6164 0.16 -0.8 179,379 - Atu6164 0.16 +2.6 179,379 - Atu6164 0.16 +1.3 179,412 - Atu6164 0.20 +1.3 179,498 - Atu6164 0.32 +0.1 179,501 + Atu6164 0.33 +0.7 179,519 - Atu6164 0.35 +0.4 179,520 - Atu6164 0.35 +0.8 179,545 + Atu6164 0.39 +0.2 179,593 - Atu6164 0.45 +0.0 179,595 + Atu6164 0.45 -0.9 179,598 - Atu6164 0.46 -0.1 179,631 + Atu6164 0.50 +2.7 179,651 - Atu6164 0.53 +1.9 179,720 - Atu6164 0.63 +0.7 179,722 + Atu6164 0.63 +0.2 179,723 + Atu6164 0.63 -0.6 179,731 - Atu6164 0.64 -0.6 179,776 + Atu6164 0.70 +1.4 179,791 - Atu6164 0.72 +1.7 179,883 + Atu6164 0.85 +0.6 179,891 - Atu6164 0.86 +1.2 179,891 - Atu6164 0.86 +1.0 179,891 - Atu6164 0.86 +1.1 179,901 - Atu6164 0.87 +0.9 179,902 - Atu6164 0.87 +0.6 179,903 - Atu6164 0.88 +0.3 179,969 + -0.4 180,038 - +0.9 180,161 + +2.1 180,170 + +1.1 180,205 + -1.5 180,205 - -0.8 180,220 - +0.4 180,233 + +0.4 180,254 - +0.8 180,258 + +1.2 180,293 + +3.6 180,329 - Atu6165 0.26 +1.8 180,393 + Atu6165 0.59 +2.3 180,464 + +1.8 180,464 + +0.1 180,464 + +3.6 180,488 + -0.3 180,535 + +0.6 180,535 + +1.5 180,557 - +0.7 180,567 - -0.4 180,590 - +2.1 180,624 + -0.8 180,632 - +0.9 180,638 + +0.8 180,642 + -0.4 180,661 + +0.5 180,670 - -0.5 180,675 - +1.4 180,692 - +3.3 180,778 + +0.7 180,785 + +2.6 180,786 - +0.2 180,786 - -1.6 180,786 - +2.3 180,793 + +0.4 180,793 + -0.5 180,793 + +0.5 180,793 + +0.4 180,801 - +0.1 180,801 - +1.0 180,801 - +3.6 180,834 + +0.7 180,842 - +0.7 180,850 - -0.3 180,863 + +2.2 180,873 + +2.8 180,881 + +1.3 180,889 - +1.7 180,889 - +2.0 180,889 - +0.6 180,889 - +0.1 180,891 + +0.7 180,891 + +0.5 180,891 + +1.6 180,891 + +2.1 180,891 + +1.3 180,899 - -0.0 180,899 - +1.2 180,906 - +2.6 180,943 - +1.1 180,945 + +0.9 180,991 + +0.2 181,009 - +0.2 181,021 + +3.6 181,021 + -0.9 181,023 + -0.5 181,031 - +1.5 181,031 - +0.9 181,031 - +0.1 181,058 + -0.2 181,129 - Atu6166 0.12 +0.2 181,174 + Atu6166 0.14 +0.4 181,174 + Atu6166 0.14 +0.4 181,174 + Atu6166 0.14 +0.6 181,174 + Atu6166 0.14 +2.6 181,174 + Atu6166 0.14 +2.2 181,174 + Atu6166 0.14 +2.4 181,174 + Atu6166 0.14 +0.2 181,182 - Atu6166 0.14 +1.9 181,182 - Atu6166 0.14 -0.1 181,182 - Atu6166 0.14 -0.0 181,182 - Atu6166 0.14 +0.6 181,210 + Atu6166 0.15 +0.1 181,336 + Atu6166 0.20 +1.8 181,336 + Atu6166 0.20 +0.7 181,344 - Atu6166 0.21 +1.6 181,357 - Atu6166 0.21 +1.7 181,361 + Atu6166 0.21 +0.7 181,366 + Atu6166 0.21 +0.9 181,366 + Atu6166 0.21 +1.3 181,371 + Atu6166 0.22 +2.1 181,374 - Atu6166 0.22 +1.7 181,434 - Atu6166 0.24 +0.8 181,442 - Atu6166 0.24 +2.1
Or see this region's nucleotide sequence