Experiment: 6-aminocaproic (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3298 and Atu3299 are separated by 177 nucleotides Atu3299 and Atu3300 are separated by 41 nucleotides Atu3300 and Atu3301 are separated by 37 nucleotides
Atu3298: Atu3298 - C4-dicarboxylate transporter DctA, at 325,132 to 326,478
Atu3298
Atu3299: Atu3299 - hypothetical protein, at 326,656 to 327,093
Atu3299
Atu3300: Atu3300 - aminotransferase, at 327,135 to 328,487
Atu3300
Atu3301: Atu3301 - short-chain alcohol dehydrogenase, at 328,525 to 329,244
Atu3301
Position (kb) 327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 326.163 kb on + strand, within Atu3298 at 326.202 kb on + strand, within Atu3298 at 326.381 kb on + strand at 326.451 kb on + strand at 326.492 kb on + strand at 326.492 kb on + strand at 326.500 kb on - strand at 326.526 kb on + strand at 326.537 kb on + strand at 326.654 kb on - strand at 326.983 kb on - strand, within Atu3299 at 327.022 kb on - strand, within Atu3299 at 327.131 kb on - strand at 327.133 kb on + strand at 327.141 kb on - strand at 327.141 kb on - strand at 327.263 kb on - strand at 327.311 kb on + strand, within Atu3300 at 327.329 kb on + strand, within Atu3300 at 327.421 kb on + strand, within Atu3300 at 327.447 kb on - strand, within Atu3300 at 327.535 kb on - strand, within Atu3300 at 327.713 kb on - strand, within Atu3300 at 327.802 kb on + strand, within Atu3300 at 327.819 kb on + strand, within Atu3300 at 327.825 kb on - strand, within Atu3300 at 327.854 kb on + strand, within Atu3300 at 327.934 kb on - strand, within Atu3300 at 327.934 kb on - strand, within Atu3300 at 327.946 kb on - strand, within Atu3300 at 327.968 kb on - strand, within Atu3300 at 327.968 kb on - strand, within Atu3300 at 328.039 kb on + strand, within Atu3300 at 328.154 kb on + strand, within Atu3300 at 328.154 kb on + strand, within Atu3300 at 328.154 kb on - strand, within Atu3300 at 328.219 kb on - strand, within Atu3300 at 328.219 kb on - strand, within Atu3300 at 328.336 kb on + strand, within Atu3300 at 328.344 kb on - strand, within Atu3300 at 328.366 kb on - strand at 328.394 kb on + strand at 328.476 kb on - strand at 328.486 kb on - strand at 328.581 kb on + strand at 328.601 kb on - strand, within Atu3301 at 328.691 kb on - strand, within Atu3301 at 328.727 kb on + strand, within Atu3301 at 328.814 kb on + strand, within Atu3301 at 328.869 kb on - strand, within Atu3301 at 328.983 kb on - strand, within Atu3301 at 329.030 kb on - strand, within Atu3301 at 329.033 kb on + strand, within Atu3301 at 329.051 kb on - strand, within Atu3301 at 329.086 kb on + strand, within Atu3301 at 329.094 kb on - strand, within Atu3301 at 329.211 kb on + strand at 329.224 kb on - strand at 329.315 kb on + strand at 329.383 kb on + strand at 329.444 kb on - strand at 329.484 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 6-aminocaproic (N) remove 326,163 + Atu3298 0.77 -0.8 326,202 + Atu3298 0.79 -0.9 326,381 + -1.4 326,451 + +0.6 326,492 + +0.5 326,492 + -0.1 326,500 - -0.0 326,526 + +0.0 326,537 + +0.1 326,654 - +0.1 326,983 - Atu3299 0.75 +4.0 327,022 - Atu3299 0.84 +0.1 327,131 - -0.1 327,133 + +0.2 327,141 - +0.1 327,141 - -0.6 327,263 - -0.2 327,311 + Atu3300 0.13 -0.9 327,329 + Atu3300 0.14 -1.0 327,421 + Atu3300 0.21 +0.4 327,447 - Atu3300 0.23 -1.8 327,535 - Atu3300 0.30 -1.1 327,713 - Atu3300 0.43 -1.2 327,802 + Atu3300 0.49 -3.1 327,819 + Atu3300 0.51 -1.4 327,825 - Atu3300 0.51 -1.6 327,854 + Atu3300 0.53 -2.4 327,934 - Atu3300 0.59 -0.8 327,934 - Atu3300 0.59 -1.5 327,946 - Atu3300 0.60 -1.5 327,968 - Atu3300 0.62 -0.6 327,968 - Atu3300 0.62 -1.8 328,039 + Atu3300 0.67 -3.1 328,154 + Atu3300 0.75 -1.8 328,154 + Atu3300 0.75 -1.0 328,154 - Atu3300 0.75 +0.4 328,219 - Atu3300 0.80 -1.0 328,219 - Atu3300 0.80 -1.5 328,336 + Atu3300 0.89 -2.2 328,344 - Atu3300 0.89 -2.3 328,366 - -0.8 328,394 + -0.6 328,476 - -1.7 328,486 - -2.2 328,581 + -0.8 328,601 - Atu3301 0.11 -0.3 328,691 - Atu3301 0.23 -1.0 328,727 + Atu3301 0.28 -0.4 328,814 + Atu3301 0.40 -0.7 328,869 - Atu3301 0.48 -1.0 328,983 - Atu3301 0.64 -2.1 329,030 - Atu3301 0.70 -0.6 329,033 + Atu3301 0.71 -0.9 329,051 - Atu3301 0.73 -1.3 329,086 + Atu3301 0.78 -0.6 329,094 - Atu3301 0.79 -1.4 329,211 + -1.4 329,224 - -1.1 329,315 + -1.0 329,383 + +1.0 329,444 - +0.9 329,484 - +1.0
Or see this region's nucleotide sequence