Strain Fitness in Pseudomonas simiae WCS417 around PS417_22845

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22830 and PS417_22835 are separated by 279 nucleotidesPS417_22835 and PS417_22840 are separated by 206 nucleotidesPS417_22840 and PS417_22845 are separated by 278 nucleotidesPS417_22845 and PS417_22850 overlap by 1 nucleotides PS417_22830: PS417_22830 - DNA polymerase IV, at 4,947,130 to 4,948,188 _22830 PS417_22835: PS417_22835 - tRNA-Met, at 4,948,468 to 4,948,544 _22835 PS417_22840: PS417_22840 - tRNA-Met, at 4,948,751 to 4,948,827 _22840 PS417_22845: PS417_22845 - membrane protein, at 4,949,106 to 4,951,748 _22845 PS417_22850: PS417_22850 - virulence factor family protein, at 4,951,748 to 4,953,022 _22850 Position (kb) 4949 4950 4951 4952Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4948.145 kb on + strandat 4948.146 kb on - strandat 4948.188 kb on + strandat 4948.188 kb on + strandat 4948.189 kb on - strandat 4948.190 kb on + strandat 4948.237 kb on + strandat 4948.237 kb on + strandat 4948.237 kb on + strandat 4948.238 kb on - strandat 4948.239 kb on + strandat 4948.240 kb on - strandat 4948.242 kb on - strandat 4948.242 kb on - strandat 4948.599 kb on + strandat 4948.647 kb on + strandat 4948.648 kb on - strandat 4948.685 kb on + strandat 4948.772 kb on - strand, within PS417_22840at 4948.772 kb on - strand, within PS417_22840at 4948.954 kb on + strandat 4949.024 kb on + strandat 4949.034 kb on + strandat 4949.056 kb on - strandat 4949.199 kb on + strandat 4949.230 kb on + strandat 4949.230 kb on + strandat 4949.231 kb on - strandat 4949.272 kb on + strandat 4949.272 kb on + strandat 4949.289 kb on + strandat 4949.375 kb on - strand, within PS417_22845at 4949.451 kb on - strand, within PS417_22845at 4949.518 kb on + strand, within PS417_22845at 4949.518 kb on + strand, within PS417_22845at 4949.519 kb on - strand, within PS417_22845at 4949.520 kb on + strand, within PS417_22845at 4949.520 kb on + strand, within PS417_22845at 4949.649 kb on + strand, within PS417_22845at 4949.730 kb on + strand, within PS417_22845at 4949.875 kb on + strand, within PS417_22845at 4949.876 kb on - strand, within PS417_22845at 4949.876 kb on - strand, within PS417_22845at 4949.876 kb on - strand, within PS417_22845at 4949.876 kb on - strand, within PS417_22845at 4949.876 kb on - strand, within PS417_22845at 4949.877 kb on + strand, within PS417_22845at 4949.877 kb on + strand, within PS417_22845at 4949.877 kb on + strandat 4949.877 kb on + strand, within PS417_22845at 4949.877 kb on + strand, within PS417_22845at 4949.877 kb on + strand, within PS417_22845at 4949.877 kb on + strand, within PS417_22845at 4949.878 kb on - strand, within PS417_22845at 4949.878 kb on - strand, within PS417_22845at 4949.878 kb on - strand, within PS417_22845at 4949.878 kb on - strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.879 kb on + strand, within PS417_22845at 4949.880 kb on - strand, within PS417_22845at 4949.880 kb on - strand, within PS417_22845at 4949.880 kb on - strand, within PS417_22845at 4949.880 kb on - strand, within PS417_22845at 4949.880 kb on - strand, within PS417_22845at 4949.880 kb on - strand, within PS417_22845at 4949.880 kb on - strand, within PS417_22845at 4949.880 kb on - strand, within PS417_22845at 4949.925 kb on + strand, within PS417_22845at 4950.054 kb on + strand, within PS417_22845at 4950.067 kb on - strand, within PS417_22845at 4950.067 kb on - strand, within PS417_22845at 4950.543 kb on + strand, within PS417_22845at 4950.543 kb on + strand, within PS417_22845at 4950.544 kb on - strand, within PS417_22845at 4950.882 kb on + strand, within PS417_22845at 4950.883 kb on - strand, within PS417_22845at 4950.915 kb on + strand, within PS417_22845at 4950.915 kb on + strand, within PS417_22845at 4950.916 kb on - strand, within PS417_22845at 4951.006 kb on - strand, within PS417_22845at 4951.032 kb on + strand, within PS417_22845at 4951.032 kb on + strand, within PS417_22845at 4951.033 kb on - strand, within PS417_22845at 4951.035 kb on + strandat 4951.035 kb on + strand, within PS417_22845at 4951.035 kb on + strand, within PS417_22845at 4951.035 kb on + strand, within PS417_22845at 4951.035 kb on + strand, within PS417_22845at 4951.035 kb on + strand, within PS417_22845at 4951.036 kb on - strand, within PS417_22845at 4951.037 kb on + strand, within PS417_22845at 4951.037 kb on + strand, within PS417_22845at 4951.256 kb on - strand, within PS417_22845at 4951.297 kb on - strand, within PS417_22845at 4951.371 kb on + strand, within PS417_22845at 4951.371 kb on + strand, within PS417_22845at 4951.372 kb on - strand, within PS417_22845at 4951.372 kb on - strand, within PS417_22845at 4951.372 kb on - strand, within PS417_22845at 4951.467 kb on + strand, within PS417_22845at 4951.467 kb on + strand, within PS417_22845at 4951.468 kb on - strand, within PS417_22845at 4951.469 kb on + strand, within PS417_22845at 4951.469 kb on + strand, within PS417_22845at 4951.470 kb on - strand, within PS417_22845at 4951.470 kb on - strand, within PS417_22845at 4951.482 kb on + strand, within PS417_22845at 4951.594 kb on - strandat 4951.595 kb on + strandat 4951.654 kb on - strandat 4951.773 kb on + strandat 4951.773 kb on + strandat 4951.774 kb on - strandat 4951.774 kb on - strandat 4951.774 kb on - strandat 4951.786 kb on - strandat 4951.786 kb on - strandat 4952.561 kb on + strand, within PS417_22850at 4952.696 kb on + strand, within PS417_22850at 4952.696 kb on + strand, within PS417_22850at 4952.696 kb on + strand, within PS417_22850at 4952.697 kb on - strand, within PS417_22850at 4952.697 kb on - strand, within PS417_22850at 4952.697 kb on - strand, within PS417_22850at 4952.741 kb on - strand, within PS417_22850at 4952.741 kb on - strand, within PS417_22850at 4952.741 kb on - strand, within PS417_22850

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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4,948,145 + +0.1
4,948,146 - +0.2
4,948,188 + -1.1
4,948,188 + +0.0
4,948,189 - -0.3
4,948,190 + +0.2
4,948,237 + -0.8
4,948,237 + -0.1
4,948,237 + +0.2
4,948,238 - +1.0
4,948,239 + -0.1
4,948,240 - +0.3
4,948,242 - +1.3
4,948,242 - -0.6
4,948,599 + +0.4
4,948,647 + +0.9
4,948,648 - -0.1
4,948,685 + -1.1
4,948,772 - PS417_22840 0.27 -0.3
4,948,772 - PS417_22840 0.27 -0.6
4,948,954 + -0.3
4,949,024 + +1.3
4,949,034 + -0.3
4,949,056 - -0.2
4,949,199 + -0.0
4,949,230 + +0.0
4,949,230 + +0.2
4,949,231 - -0.6
4,949,272 + -0.0
4,949,272 + -1.5
4,949,289 + +0.2
4,949,375 - PS417_22845 0.10 +0.0
4,949,451 - PS417_22845 0.13 -0.4
4,949,518 + PS417_22845 0.16 +0.2
4,949,518 + PS417_22845 0.16 +1.2
4,949,519 - PS417_22845 0.16 -0.7
4,949,520 + PS417_22845 0.16 +0.2
4,949,520 + PS417_22845 0.16 -1.7
4,949,649 + PS417_22845 0.21 -0.4
4,949,730 + PS417_22845 0.24 -0.7
4,949,875 + PS417_22845 0.29 +0.0
4,949,876 - PS417_22845 0.29 +1.6
4,949,876 - PS417_22845 0.29 +0.1
4,949,876 - PS417_22845 0.29 -0.2
4,949,876 - PS417_22845 0.29 +0.1
4,949,876 - PS417_22845 0.29 -0.2
4,949,877 + PS417_22845 0.29 -0.2
4,949,877 + PS417_22845 0.29 -0.4
4,949,877 + -0.7
4,949,877 + PS417_22845 0.29 +0.2
4,949,877 + PS417_22845 0.29 -0.9
4,949,877 + PS417_22845 0.29 -1.6
4,949,877 + PS417_22845 0.29 +0.1
4,949,878 - PS417_22845 0.29 -1.2
4,949,878 - PS417_22845 0.29 +1.1
4,949,878 - PS417_22845 0.29 -0.4
4,949,878 - PS417_22845 0.29 +0.6
4,949,879 + PS417_22845 0.29 -0.0
4,949,879 + PS417_22845 0.29 -0.2
4,949,879 + PS417_22845 0.29 -0.0
4,949,879 + PS417_22845 0.29 -0.7
4,949,879 + PS417_22845 0.29 +0.7
4,949,879 + PS417_22845 0.29 -0.2
4,949,879 + PS417_22845 0.29 +0.0
4,949,879 + PS417_22845 0.29 +0.3
4,949,879 + PS417_22845 0.29 +0.1
4,949,879 + PS417_22845 0.29 +0.5
4,949,880 - PS417_22845 0.29 +0.1
4,949,880 - PS417_22845 0.29 +0.1
4,949,880 - PS417_22845 0.29 +0.9
4,949,880 - PS417_22845 0.29 +0.4
4,949,880 - PS417_22845 0.29 -0.2
4,949,880 - PS417_22845 0.29 -0.2
4,949,880 - PS417_22845 0.29 +1.0
4,949,880 - PS417_22845 0.29 +0.5
4,949,925 + PS417_22845 0.31 +0.3
4,950,054 + PS417_22845 0.36 -0.1
4,950,067 - PS417_22845 0.36 +0.1
4,950,067 - PS417_22845 0.36 -0.2
4,950,543 + PS417_22845 0.54 -0.0
4,950,543 + PS417_22845 0.54 -1.3
4,950,544 - PS417_22845 0.54 -0.3
4,950,882 + PS417_22845 0.67 +0.1
4,950,883 - PS417_22845 0.67 -0.0
4,950,915 + PS417_22845 0.68 +0.1
4,950,915 + PS417_22845 0.68 +0.8
4,950,916 - PS417_22845 0.68 +0.4
4,951,006 - PS417_22845 0.72 -0.6
4,951,032 + PS417_22845 0.73 +0.8
4,951,032 + PS417_22845 0.73 -1.1
4,951,033 - PS417_22845 0.73 +0.6
4,951,035 + +2.3
4,951,035 + PS417_22845 0.73 -2.1
4,951,035 + PS417_22845 0.73 -0.1
4,951,035 + PS417_22845 0.73 +0.9
4,951,035 + PS417_22845 0.73 -0.4
4,951,035 + PS417_22845 0.73 -0.0
4,951,036 - PS417_22845 0.73 -0.1
4,951,037 + PS417_22845 0.73 -1.2
4,951,037 + PS417_22845 0.73 -0.6
4,951,256 - PS417_22845 0.81 -0.1
4,951,297 - PS417_22845 0.83 +0.2
4,951,371 + PS417_22845 0.86 +0.5
4,951,371 + PS417_22845 0.86 -0.7
4,951,372 - PS417_22845 0.86 -0.6
4,951,372 - PS417_22845 0.86 +0.4
4,951,372 - PS417_22845 0.86 -0.3
4,951,467 + PS417_22845 0.89 +0.4
4,951,467 + PS417_22845 0.89 -0.3
4,951,468 - PS417_22845 0.89 +0.6
4,951,469 + PS417_22845 0.89 -0.3
4,951,469 + PS417_22845 0.89 +1.1
4,951,470 - PS417_22845 0.89 +0.7
4,951,470 - PS417_22845 0.89 -0.6
4,951,482 + PS417_22845 0.90 +0.5
4,951,594 - -0.2
4,951,595 + -0.3
4,951,654 - -0.2
4,951,773 + -0.2
4,951,773 + +0.4
4,951,774 - +0.5
4,951,774 - -1.3
4,951,774 - -0.0
4,951,786 - +0.1
4,951,786 - -0.3
4,952,561 + PS417_22850 0.64 -0.3
4,952,696 + PS417_22850 0.74 +0.4
4,952,696 + PS417_22850 0.74 +0.4
4,952,696 + PS417_22850 0.74 +0.3
4,952,697 - PS417_22850 0.74 -0.0
4,952,697 - PS417_22850 0.74 +2.9
4,952,697 - PS417_22850 0.74 +0.1
4,952,741 - PS417_22850 0.78 -0.1
4,952,741 - PS417_22850 0.78 -0.3
4,952,741 - PS417_22850 0.78 +0.1

Or see this region's nucleotide sequence