Strain Fitness in Pseudomonas simiae WCS417 around PS417_18400

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18390 and PS417_18395 are separated by 3 nucleotidesPS417_18395 and PS417_18400 overlap by 4 nucleotidesPS417_18400 and PS417_18405 are separated by 57 nucleotides PS417_18390: PS417_18390 - LacI family transcriptional regulator, at 4,003,113 to 4,004,135 _18390 PS417_18395: PS417_18395 - D-ribose ABC transporter, permease component RbsC (from data), at 4,004,139 to 4,005,116 _18395 PS417_18400: PS417_18400 - D-ribose ABC transporter, ATPase component RbsA (from data), at 4,005,113 to 4,006,666 _18400 PS417_18405: PS417_18405 - D-ribose ABC transporter, substrate-binding component RbsB (from data), at 4,006,724 to 4,007,680 _18405 Position (kb) 4005 4006 4007Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4004.281 kb on - strand, within PS417_18395at 4004.545 kb on - strand, within PS417_18395at 4004.660 kb on - strand, within PS417_18395at 4004.941 kb on - strand, within PS417_18395at 4005.810 kb on + strand, within PS417_18400at 4005.810 kb on + strand, within PS417_18400at 4005.810 kb on + strand, within PS417_18400at 4005.972 kb on + strand, within PS417_18400at 4005.973 kb on - strand, within PS417_18400at 4006.667 kb on - strandat 4007.249 kb on + strand, within PS417_18405

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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4,004,281 - PS417_18395 0.15 -1.4
4,004,545 - PS417_18395 0.42 -3.2
4,004,660 - PS417_18395 0.53 -3.7
4,004,941 - PS417_18395 0.82 -1.7
4,005,810 + PS417_18400 0.45 -1.4
4,005,810 + PS417_18400 0.45 -2.6
4,005,810 + PS417_18400 0.45 -2.8
4,005,972 + PS417_18400 0.55 -5.2
4,005,973 - PS417_18400 0.55 -1.9
4,006,667 - -3.3
4,007,249 + PS417_18405 0.55 -0.9

Or see this region's nucleotide sequence