Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0738 and Echvi_0739 are separated by 285 nucleotides Echvi_0739 and Echvi_0740 are separated by 62 nucleotides Echvi_0740 and Echvi_0741 are separated by 112 nucleotides
Echvi_0738: Echvi_0738 - Acyl-CoA dehydrogenases, at 827,101 to 828,459
_0738
Echvi_0739: Echvi_0739 - hypothetical protein, at 828,745 to 829,599
_0739
Echvi_0740: Echvi_0740 - Lysophospholipase L1 and related esterases, at 829,662 to 830,321
_0740
Echvi_0741: Echvi_0741 - Putative NADPH-quinone reductase (modulator of drug activity B), at 830,434 to 831,012
_0741
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 827.859 kb on + strand, within Echvi_0738 at 827.860 kb on - strand, within Echvi_0738 at 828.076 kb on + strand, within Echvi_0738 at 828.077 kb on - strand, within Echvi_0738 at 828.261 kb on + strand, within Echvi_0738 at 828.262 kb on - strand, within Echvi_0738 at 828.274 kb on - strand, within Echvi_0738 at 828.343 kb on + strand at 828.383 kb on - strand at 828.383 kb on - strand at 828.383 kb on - strand at 828.388 kb on + strand at 828.389 kb on - strand at 828.389 kb on - strand at 828.492 kb on - strand at 828.494 kb on + strand at 828.495 kb on - strand at 828.497 kb on - strand at 828.513 kb on - strand at 828.513 kb on - strand at 828.543 kb on + strand at 828.544 kb on - strand at 828.553 kb on + strand at 828.553 kb on + strand at 828.554 kb on - strand at 828.554 kb on - strand at 828.554 kb on - strand at 828.558 kb on + strand at 828.574 kb on + strand at 828.575 kb on - strand at 828.575 kb on - strand at 828.619 kb on + strand at 828.619 kb on + strand at 828.639 kb on + strand at 828.639 kb on + strand at 828.639 kb on + strand at 828.642 kb on + strand at 828.643 kb on - strand at 828.687 kb on - strand at 828.776 kb on - strand at 828.779 kb on + strand at 828.866 kb on - strand, within Echvi_0739 at 828.878 kb on + strand, within Echvi_0739 at 828.879 kb on - strand, within Echvi_0739 at 828.884 kb on + strand, within Echvi_0739 at 828.884 kb on + strand, within Echvi_0739 at 828.885 kb on - strand, within Echvi_0739 at 828.923 kb on + strand, within Echvi_0739 at 828.924 kb on - strand, within Echvi_0739 at 829.011 kb on + strand, within Echvi_0739 at 829.021 kb on - strand, within Echvi_0739 at 829.021 kb on - strand, within Echvi_0739 at 829.025 kb on + strand, within Echvi_0739 at 829.026 kb on - strand, within Echvi_0739 at 829.032 kb on + strand, within Echvi_0739 at 829.034 kb on + strand, within Echvi_0739 at 829.035 kb on - strand, within Echvi_0739 at 829.048 kb on + strand, within Echvi_0739 at 829.049 kb on - strand, within Echvi_0739 at 829.049 kb on - strand, within Echvi_0739 at 829.054 kb on - strand, within Echvi_0739 at 829.155 kb on + strand, within Echvi_0739 at 829.156 kb on - strand, within Echvi_0739 at 829.157 kb on + strand, within Echvi_0739 at 829.157 kb on + strand, within Echvi_0739 at 829.158 kb on - strand, within Echvi_0739 at 829.170 kb on + strand, within Echvi_0739 at 829.174 kb on + strand, within Echvi_0739 at 829.188 kb on + strand, within Echvi_0739 at 829.224 kb on + strand, within Echvi_0739 at 829.429 kb on - strand, within Echvi_0739 at 829.431 kb on - strand, within Echvi_0739 at 829.441 kb on + strand at 829.442 kb on - strand, within Echvi_0739 at 829.463 kb on + strand, within Echvi_0739 at 829.464 kb on - strand, within Echvi_0739 at 829.464 kb on - strand, within Echvi_0739 at 829.484 kb on - strand, within Echvi_0739 at 829.559 kb on + strand at 829.560 kb on - strand at 829.563 kb on + strand at 829.599 kb on + strand at 829.599 kb on + strand at 829.603 kb on + strand at 829.603 kb on + strand at 829.638 kb on + strand at 829.644 kb on + strand at 829.644 kb on + strand at 829.645 kb on - strand at 829.660 kb on - strand at 829.711 kb on + strand at 829.754 kb on + strand at 829.755 kb on - strand, within Echvi_0740 at 829.757 kb on + strand, within Echvi_0740 at 829.758 kb on - strand, within Echvi_0740 at 829.854 kb on + strand, within Echvi_0740 at 829.908 kb on + strand, within Echvi_0740 at 829.908 kb on + strand, within Echvi_0740 at 830.013 kb on + strand, within Echvi_0740 at 830.014 kb on - strand, within Echvi_0740 at 830.014 kb on - strand, within Echvi_0740 at 830.015 kb on + strand, within Echvi_0740 at 830.016 kb on - strand, within Echvi_0740 at 830.038 kb on - strand, within Echvi_0740 at 830.038 kb on - strand, within Echvi_0740 at 830.089 kb on + strand, within Echvi_0740 at 830.089 kb on + strand, within Echvi_0740 at 830.089 kb on + strand, within Echvi_0740 at 830.089 kb on + strand, within Echvi_0740 at 830.090 kb on - strand, within Echvi_0740 at 830.090 kb on - strand, within Echvi_0740 at 830.090 kb on - strand, within Echvi_0740 at 830.090 kb on - strand, within Echvi_0740 at 830.091 kb on + strand, within Echvi_0740 at 830.091 kb on + strand, within Echvi_0740 at 830.091 kb on + strand, within Echvi_0740 at 830.091 kb on + strand, within Echvi_0740 at 830.092 kb on - strand, within Echvi_0740 at 830.092 kb on - strand, within Echvi_0740 at 830.095 kb on + strand, within Echvi_0740 at 830.095 kb on + strand, within Echvi_0740 at 830.095 kb on + strand, within Echvi_0740 at 830.095 kb on + strand, within Echvi_0740 at 830.095 kb on + strand, within Echvi_0740 at 830.095 kb on + strand, within Echvi_0740 at 830.095 kb on + strand, within Echvi_0740 at 830.095 kb on + strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.096 kb on - strand, within Echvi_0740 at 830.146 kb on + strand, within Echvi_0740 at 830.146 kb on + strand, within Echvi_0740 at 830.147 kb on - strand, within Echvi_0740 at 830.147 kb on - strand, within Echvi_0740 at 830.192 kb on + strand, within Echvi_0740 at 830.315 kb on + strand at 830.320 kb on - strand at 830.320 kb on - strand at 830.375 kb on + strand at 830.375 kb on + strand at 830.380 kb on + strand at 830.380 kb on + strand at 830.381 kb on - strand at 830.390 kb on + strand at 830.391 kb on - strand at 830.391 kb on - strand at 830.424 kb on - strand at 830.435 kb on + strand at 830.436 kb on - strand at 830.436 kb on - strand at 830.466 kb on + strand at 830.467 kb on - strand at 830.545 kb on + strand, within Echvi_0741 at 830.545 kb on + strand, within Echvi_0741 at 830.577 kb on + strand, within Echvi_0741 at 830.577 kb on + strand, within Echvi_0741
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 827,859 + Echvi_0738 0.56 -1.0 827,860 - Echvi_0738 0.56 -2.4 828,076 + Echvi_0738 0.72 -0.2 828,077 - Echvi_0738 0.72 -1.0 828,261 + Echvi_0738 0.85 -0.8 828,262 - Echvi_0738 0.85 +0.1 828,274 - Echvi_0738 0.86 -0.5 828,343 + -1.3 828,383 - +0.4 828,383 - +1.5 828,383 - -1.6 828,388 + -0.3 828,389 - -0.1 828,389 - -0.5 828,492 - -1.3 828,494 + +1.6 828,495 - -0.6 828,497 - +0.7 828,513 - -0.7 828,513 - +0.7 828,543 + -1.0 828,544 - +0.5 828,553 + +0.9 828,553 + -0.4 828,554 - -0.7 828,554 - -0.4 828,554 - +0.4 828,558 + +0.5 828,574 + +0.9 828,575 - +0.0 828,575 - +0.7 828,619 + +1.3 828,619 + -0.2 828,639 + +0.1 828,639 + +0.5 828,639 + +0.3 828,642 + +0.5 828,643 - +0.7 828,687 - +0.3 828,776 - -0.3 828,779 + +0.6 828,866 - Echvi_0739 0.14 -2.8 828,878 + Echvi_0739 0.16 +0.1 828,879 - Echvi_0739 0.16 -2.7 828,884 + Echvi_0739 0.16 -0.6 828,884 + Echvi_0739 0.16 -1.9 828,885 - Echvi_0739 0.16 -1.0 828,923 + Echvi_0739 0.21 -0.9 828,924 - Echvi_0739 0.21 -0.6 829,011 + Echvi_0739 0.31 -1.6 829,021 - Echvi_0739 0.32 -0.1 829,021 - Echvi_0739 0.32 -0.2 829,025 + Echvi_0739 0.33 -2.5 829,026 - Echvi_0739 0.33 +0.2 829,032 + Echvi_0739 0.34 -2.3 829,034 + Echvi_0739 0.34 +0.3 829,035 - Echvi_0739 0.34 -0.5 829,048 + Echvi_0739 0.35 -3.5 829,049 - Echvi_0739 0.36 -0.3 829,049 - Echvi_0739 0.36 -2.2 829,054 - Echvi_0739 0.36 -2.0 829,155 + Echvi_0739 0.48 -0.3 829,156 - Echvi_0739 0.48 -1.4 829,157 + Echvi_0739 0.48 -3.2 829,157 + Echvi_0739 0.48 -0.1 829,158 - Echvi_0739 0.48 -0.7 829,170 + Echvi_0739 0.50 +0.1 829,174 + Echvi_0739 0.50 -1.9 829,188 + Echvi_0739 0.52 -1.3 829,224 + Echvi_0739 0.56 -0.3 829,429 - Echvi_0739 0.80 -1.7 829,431 - Echvi_0739 0.80 +1.1 829,441 + -0.2 829,442 - Echvi_0739 0.82 +0.5 829,463 + Echvi_0739 0.84 -1.0 829,464 - Echvi_0739 0.84 -2.3 829,464 - Echvi_0739 0.84 -2.3 829,484 - Echvi_0739 0.86 +0.1 829,559 + -0.2 829,560 - -1.3 829,563 + -0.3 829,599 + +0.4 829,599 + -0.6 829,603 + -1.2 829,603 + -2.3 829,638 + -0.6 829,644 + -0.9 829,644 + -0.1 829,645 - +0.5 829,660 - -2.7 829,711 + +0.7 829,754 + +3.7 829,755 - Echvi_0740 0.14 -2.6 829,757 + Echvi_0740 0.14 -2.0 829,758 - Echvi_0740 0.15 -0.6 829,854 + Echvi_0740 0.29 +0.2 829,908 + Echvi_0740 0.37 +2.5 829,908 + Echvi_0740 0.37 -0.9 830,013 + Echvi_0740 0.53 +0.3 830,014 - Echvi_0740 0.53 -0.7 830,014 - Echvi_0740 0.53 +0.9 830,015 + Echvi_0740 0.53 +0.4 830,016 - Echvi_0740 0.54 +0.5 830,038 - Echvi_0740 0.57 +2.4 830,038 - Echvi_0740 0.57 +0.2 830,089 + Echvi_0740 0.65 +1.9 830,089 + Echvi_0740 0.65 -1.6 830,089 + Echvi_0740 0.65 +0.1 830,089 + Echvi_0740 0.65 -0.3 830,090 - Echvi_0740 0.65 +1.7 830,090 - Echvi_0740 0.65 +0.8 830,090 - Echvi_0740 0.65 +0.8 830,090 - Echvi_0740 0.65 +1.3 830,091 + Echvi_0740 0.65 -0.5 830,091 + Echvi_0740 0.65 +1.6 830,091 + Echvi_0740 0.65 -1.6 830,091 + Echvi_0740 0.65 -2.0 830,092 - Echvi_0740 0.65 -0.7 830,092 - Echvi_0740 0.65 -0.1 830,095 + Echvi_0740 0.66 -0.9 830,095 + Echvi_0740 0.66 +0.9 830,095 + Echvi_0740 0.66 +0.1 830,095 + Echvi_0740 0.66 +0.2 830,095 + Echvi_0740 0.66 +0.2 830,095 + Echvi_0740 0.66 -0.2 830,095 + Echvi_0740 0.66 +0.8 830,095 + Echvi_0740 0.66 -1.8 830,096 - Echvi_0740 0.66 +0.3 830,096 - Echvi_0740 0.66 -1.0 830,096 - Echvi_0740 0.66 -0.5 830,096 - Echvi_0740 0.66 -0.2 830,096 - Echvi_0740 0.66 +1.7 830,096 - Echvi_0740 0.66 +1.5 830,096 - Echvi_0740 0.66 -0.0 830,096 - Echvi_0740 0.66 +1.2 830,096 - Echvi_0740 0.66 +0.6 830,096 - Echvi_0740 0.66 -1.3 830,146 + Echvi_0740 0.73 -1.5 830,146 + Echvi_0740 0.73 -0.1 830,147 - Echvi_0740 0.73 +0.7 830,147 - Echvi_0740 0.73 -0.0 830,192 + Echvi_0740 0.80 +0.7 830,315 + -1.5 830,320 - +0.3 830,320 - -0.9 830,375 + -1.2 830,375 + -0.7 830,380 + -0.5 830,380 + +0.5 830,381 - +1.1 830,390 + -0.3 830,391 - +1.5 830,391 - +2.1 830,424 - +0.5 830,435 + +1.0 830,436 - -0.5 830,436 - -0.7 830,466 + +0.5 830,467 - +0.3 830,545 + Echvi_0741 0.19 -2.3 830,545 + Echvi_0741 0.19 -1.0 830,577 + Echvi_0741 0.25 +1.1 830,577 + Echvi_0741 0.25 -3.1
Or see this region's nucleotide sequence