Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0493 and Echvi_0494 are separated by 250 nucleotides Echvi_0494 and Echvi_0495 are separated by 72 nucleotides
Echvi_0493: Echvi_0493 - TonB-linked outer membrane protein, SusC/RagA family, at 546,862 to 549,831
_0493
Echvi_0494: Echvi_0494 - hypothetical protein, at 550,082 to 551,230
_0494
Echvi_0495: Echvi_0495 - Beta-xylosidase, at 551,303 to 552,301
_0495
Position (kb) 550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 549.083 kb on + strand, within Echvi_0493 at 549.083 kb on + strand, within Echvi_0493 at 549.174 kb on - strand, within Echvi_0493 at 549.254 kb on + strand, within Echvi_0493 at 549.254 kb on + strand, within Echvi_0493 at 549.333 kb on + strand, within Echvi_0493 at 549.333 kb on + strand, within Echvi_0493 at 549.367 kb on - strand, within Echvi_0493 at 549.448 kb on + strand, within Echvi_0493 at 549.490 kb on + strand, within Echvi_0493 at 549.490 kb on + strand, within Echvi_0493 at 549.493 kb on + strand, within Echvi_0493 at 549.493 kb on + strand, within Echvi_0493 at 549.493 kb on + strand, within Echvi_0493 at 549.494 kb on - strand, within Echvi_0493 at 549.494 kb on - strand, within Echvi_0493 at 549.494 kb on - strand, within Echvi_0493 at 549.499 kb on + strand, within Echvi_0493 at 549.529 kb on - strand, within Echvi_0493 at 549.573 kb on + strand at 549.627 kb on + strand at 549.627 kb on + strand at 549.782 kb on - strand at 549.790 kb on + strand at 549.818 kb on - strand at 549.845 kb on + strand at 549.859 kb on + strand at 549.872 kb on + strand at 549.872 kb on + strand at 550.034 kb on - strand at 550.039 kb on + strand at 550.065 kb on - strand at 550.129 kb on + strand at 550.130 kb on - strand at 550.236 kb on - strand at 550.247 kb on + strand, within Echvi_0494 at 550.290 kb on - strand, within Echvi_0494 at 550.458 kb on + strand, within Echvi_0494 at 550.459 kb on - strand, within Echvi_0494 at 550.459 kb on - strand, within Echvi_0494 at 550.499 kb on + strand, within Echvi_0494 at 550.501 kb on + strand, within Echvi_0494 at 550.502 kb on - strand, within Echvi_0494 at 550.521 kb on - strand, within Echvi_0494 at 550.521 kb on - strand, within Echvi_0494 at 550.583 kb on - strand, within Echvi_0494 at 550.583 kb on - strand, within Echvi_0494 at 550.616 kb on + strand, within Echvi_0494 at 550.617 kb on - strand, within Echvi_0494 at 550.631 kb on - strand, within Echvi_0494 at 550.641 kb on - strand, within Echvi_0494 at 550.650 kb on - strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.653 kb on + strand, within Echvi_0494 at 550.654 kb on - strand, within Echvi_0494 at 550.703 kb on + strand, within Echvi_0494 at 550.744 kb on + strand, within Echvi_0494 at 550.745 kb on - strand, within Echvi_0494 at 550.810 kb on + strand, within Echvi_0494 at 550.832 kb on + strand at 550.833 kb on - strand, within Echvi_0494 at 550.865 kb on - strand, within Echvi_0494 at 550.876 kb on + strand, within Echvi_0494 at 550.983 kb on + strand, within Echvi_0494 at 550.986 kb on - strand, within Echvi_0494 at 550.986 kb on - strand, within Echvi_0494 at 551.074 kb on + strand, within Echvi_0494 at 551.150 kb on - strand at 551.215 kb on + strand at 551.216 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.218 kb on - strand at 551.256 kb on + strand at 551.256 kb on + strand at 551.256 kb on + strand at 551.259 kb on - strand at 551.259 kb on - strand at 551.302 kb on - strand at 551.304 kb on + strand at 551.308 kb on + strand at 551.308 kb on + strand at 551.309 kb on - strand at 551.318 kb on + strand at 551.319 kb on - strand at 551.362 kb on + strand at 551.541 kb on + strand, within Echvi_0495 at 551.541 kb on + strand, within Echvi_0495 at 551.684 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.688 kb on - strand, within Echvi_0495 at 551.785 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.982 kb on + strand, within Echvi_0495 at 551.983 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.995 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.998 kb on - strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.164 kb on + strand, within Echvi_0495 at 552.166 kb on + strand, within Echvi_0495 at 552.167 kb on - strand, within Echvi_0495
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 549,083 + Echvi_0493 0.75 +0.5 549,083 + Echvi_0493 0.75 -0.3 549,174 - Echvi_0493 0.78 +0.3 549,254 + Echvi_0493 0.81 -1.0 549,254 + Echvi_0493 0.81 +1.3 549,333 + Echvi_0493 0.83 +0.2 549,333 + Echvi_0493 0.83 -0.1 549,367 - Echvi_0493 0.84 -0.6 549,448 + Echvi_0493 0.87 +0.8 549,490 + Echvi_0493 0.88 -1.1 549,490 + Echvi_0493 0.88 -0.2 549,493 + Echvi_0493 0.89 +0.4 549,493 + Echvi_0493 0.89 +1.3 549,493 + Echvi_0493 0.89 -0.8 549,494 - Echvi_0493 0.89 -2.7 549,494 - Echvi_0493 0.89 -1.4 549,494 - Echvi_0493 0.89 +0.2 549,499 + Echvi_0493 0.89 -2.7 549,529 - Echvi_0493 0.90 -0.1 549,573 + +1.3 549,627 + +1.0 549,627 + -0.0 549,782 - +1.0 549,790 + -0.4 549,818 - -1.1 549,845 + +0.2 549,859 + -3.5 549,872 + +0.9 549,872 + -1.0 550,034 - -0.3 550,039 + -1.4 550,065 - -0.1 550,129 + -0.5 550,130 - +0.5 550,236 - +0.5 550,247 + Echvi_0494 0.14 +0.4 550,290 - Echvi_0494 0.18 +1.1 550,458 + Echvi_0494 0.33 -1.0 550,459 - Echvi_0494 0.33 +0.7 550,459 - Echvi_0494 0.33 +1.6 550,499 + Echvi_0494 0.36 -1.7 550,501 + Echvi_0494 0.36 -1.0 550,502 - Echvi_0494 0.37 -0.2 550,521 - Echvi_0494 0.38 +0.2 550,521 - Echvi_0494 0.38 -0.6 550,583 - Echvi_0494 0.44 +0.0 550,583 - Echvi_0494 0.44 +0.6 550,616 + Echvi_0494 0.46 +0.9 550,617 - Echvi_0494 0.47 +0.6 550,631 - Echvi_0494 0.48 +0.5 550,641 - Echvi_0494 0.49 +2.2 550,650 - Echvi_0494 0.49 +1.7 550,653 + Echvi_0494 0.50 -0.0 550,653 + Echvi_0494 0.50 +0.7 550,653 + Echvi_0494 0.50 -0.7 550,654 - Echvi_0494 0.50 +1.3 550,703 + Echvi_0494 0.54 -0.9 550,744 + Echvi_0494 0.58 +2.1 550,745 - Echvi_0494 0.58 +2.8 550,810 + Echvi_0494 0.63 +0.0 550,832 + +1.0 550,833 - Echvi_0494 0.65 +0.0 550,865 - Echvi_0494 0.68 -0.3 550,876 + Echvi_0494 0.69 -2.2 550,983 + Echvi_0494 0.78 -0.5 550,986 - Echvi_0494 0.79 -0.4 550,986 - Echvi_0494 0.79 +0.1 551,074 + Echvi_0494 0.86 -0.5 551,150 - +0.4 551,215 + -0.4 551,216 - +0.7 551,218 - -1.1 551,218 - -2.5 551,218 - +0.1 551,218 - +0.6 551,218 - +0.6 551,256 + +1.2 551,256 + -2.7 551,256 + +0.6 551,259 - +0.6 551,259 - -0.1 551,302 - +0.2 551,304 + -1.1 551,308 + -0.5 551,308 + +1.5 551,309 - +0.0 551,318 + -0.1 551,319 - +0.2 551,362 + +0.5 551,541 + Echvi_0495 0.24 +0.1 551,541 + Echvi_0495 0.24 -1.8 551,684 + Echvi_0495 0.38 +1.0 551,687 + Echvi_0495 0.38 -0.4 551,687 + Echvi_0495 0.38 -1.1 551,688 - Echvi_0495 0.39 -0.2 551,785 + Echvi_0495 0.48 -1.1 551,787 + Echvi_0495 0.48 -0.6 551,787 + Echvi_0495 0.48 +1.5 551,788 - Echvi_0495 0.49 -0.5 551,788 - Echvi_0495 0.49 -2.1 551,900 + Echvi_0495 0.60 -0.0 551,900 + Echvi_0495 0.60 +0.5 551,900 + Echvi_0495 0.60 -3.1 551,901 - Echvi_0495 0.60 -1.3 551,901 - Echvi_0495 0.60 +1.0 551,982 + Echvi_0495 0.68 +1.1 551,983 - Echvi_0495 0.68 +1.4 551,986 - Echvi_0495 0.68 +0.1 551,986 - Echvi_0495 0.68 -0.5 551,995 + Echvi_0495 0.69 +1.1 551,997 + Echvi_0495 0.69 +0.9 551,997 + Echvi_0495 0.69 +0.8 551,997 + Echvi_0495 0.69 -0.8 551,998 - Echvi_0495 0.70 +0.1 552,133 + Echvi_0495 0.83 -2.4 552,133 + Echvi_0495 0.83 +0.1 552,134 - Echvi_0495 0.83 +0.3 552,134 - Echvi_0495 0.83 -1.6 552,134 - Echvi_0495 0.83 +0.2 552,136 - Echvi_0495 0.83 -1.2 552,136 - Echvi_0495 0.83 -0.9 552,136 - Echvi_0495 0.83 +1.1 552,136 - Echvi_0495 0.83 +0.6 552,136 - Echvi_0495 0.83 +2.2 552,136 - Echvi_0495 0.83 -0.3 552,138 + Echvi_0495 0.84 -1.8 552,138 + Echvi_0495 0.84 -1.3 552,139 - Echvi_0495 0.84 -1.4 552,139 - Echvi_0495 0.84 +0.3 552,139 - Echvi_0495 0.84 -0.7 552,164 + Echvi_0495 0.86 +0.2 552,166 + Echvi_0495 0.86 -1.2 552,167 - Echvi_0495 0.86 +1.7
Or see this region's nucleotide sequence