Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0485

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0483 and Echvi_0484 are separated by 34 nucleotidesEchvi_0484 and Echvi_0485 are separated by 270 nucleotidesEchvi_0485 and Echvi_0486 are separated by 92 nucleotides Echvi_0483: Echvi_0483 - hypothetical protein, at 531,703 to 532,836 _0483 Echvi_0484: Echvi_0484 - hypothetical protein, at 532,871 to 532,999 _0484 Echvi_0485: Echvi_0485 - Beta-galactosidase/beta-glucuronidase, at 533,270 to 536,386 _0485 Echvi_0486: Echvi_0486 - Beta-xylosidase, at 536,479 to 538,623 _0486 Position (kb) 533 534 535 536 537Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 532.313 kb on + strand, within Echvi_0483at 532.314 kb on - strand, within Echvi_0483at 532.350 kb on + strand, within Echvi_0483at 532.352 kb on + strand, within Echvi_0483at 532.352 kb on + strand, within Echvi_0483at 532.353 kb on - strand, within Echvi_0483at 532.353 kb on - strand, within Echvi_0483at 532.469 kb on - strand, within Echvi_0483at 532.483 kb on + strand, within Echvi_0483at 532.529 kb on + strand, within Echvi_0483at 532.534 kb on + strand, within Echvi_0483at 532.676 kb on + strand, within Echvi_0483at 532.677 kb on - strand, within Echvi_0483at 532.677 kb on - strand, within Echvi_0483at 532.677 kb on - strand, within Echvi_0483at 532.677 kb on - strand, within Echvi_0483at 532.679 kb on + strand, within Echvi_0483at 532.680 kb on - strand, within Echvi_0483at 532.680 kb on - strand, within Echvi_0483at 532.680 kb on - strand, within Echvi_0483at 532.719 kb on + strand, within Echvi_0483at 532.806 kb on + strandat 532.812 kb on + strandat 532.812 kb on + strandat 532.814 kb on + strandat 532.847 kb on + strandat 532.897 kb on + strand, within Echvi_0484at 532.915 kb on - strand, within Echvi_0484at 532.998 kb on - strandat 533.022 kb on + strandat 533.063 kb on + strandat 533.064 kb on - strandat 533.064 kb on - strandat 533.067 kb on - strandat 533.135 kb on + strandat 533.139 kb on + strandat 533.140 kb on - strandat 533.202 kb on + strandat 533.209 kb on + strandat 533.210 kb on - strandat 533.249 kb on - strandat 533.256 kb on + strandat 533.292 kb on + strandat 533.292 kb on + strandat 533.293 kb on - strandat 533.299 kb on - strandat 533.356 kb on + strandat 533.357 kb on - strandat 533.416 kb on + strandat 533.417 kb on - strandat 533.425 kb on + strandat 533.426 kb on - strandat 533.426 kb on - strandat 533.504 kb on + strandat 533.504 kb on + strandat 533.505 kb on - strandat 533.534 kb on - strandat 533.559 kb on - strandat 533.595 kb on + strand, within Echvi_0485at 533.595 kb on + strand, within Echvi_0485at 533.596 kb on - strand, within Echvi_0485at 533.631 kb on + strand, within Echvi_0485at 533.631 kb on + strand, within Echvi_0485at 533.632 kb on - strand, within Echvi_0485at 533.691 kb on + strand, within Echvi_0485at 533.692 kb on - strand, within Echvi_0485at 533.692 kb on - strand, within Echvi_0485at 533.692 kb on - strand, within Echvi_0485at 533.694 kb on + strand, within Echvi_0485at 533.789 kb on + strand, within Echvi_0485at 533.820 kb on + strand, within Echvi_0485at 533.859 kb on + strand, within Echvi_0485at 533.877 kb on - strand, within Echvi_0485at 533.965 kb on + strand, within Echvi_0485at 533.965 kb on + strand, within Echvi_0485at 533.965 kb on + strand, within Echvi_0485at 533.966 kb on - strand, within Echvi_0485at 533.966 kb on - strand, within Echvi_0485at 534.027 kb on - strand, within Echvi_0485at 534.050 kb on + strand, within Echvi_0485at 534.051 kb on - strand, within Echvi_0485at 534.058 kb on - strand, within Echvi_0485at 534.058 kb on - strand, within Echvi_0485at 534.180 kb on + strand, within Echvi_0485at 534.318 kb on + strand, within Echvi_0485at 534.405 kb on + strand, within Echvi_0485at 534.473 kb on + strand, within Echvi_0485at 534.622 kb on + strand, within Echvi_0485at 534.664 kb on + strand, within Echvi_0485at 534.665 kb on - strand, within Echvi_0485at 534.730 kb on + strand, within Echvi_0485at 534.731 kb on - strand, within Echvi_0485at 534.731 kb on - strand, within Echvi_0485at 534.751 kb on - strand, within Echvi_0485at 534.763 kb on + strand, within Echvi_0485at 534.764 kb on - strand, within Echvi_0485at 534.814 kb on + strand, within Echvi_0485at 534.817 kb on + strand, within Echvi_0485at 534.823 kb on - strand, within Echvi_0485at 534.823 kb on - strand, within Echvi_0485at 534.921 kb on + strand, within Echvi_0485at 534.970 kb on + strand, within Echvi_0485at 534.970 kb on + strand, within Echvi_0485at 535.044 kb on + strand, within Echvi_0485at 535.108 kb on + strand, within Echvi_0485at 535.128 kb on + strand, within Echvi_0485at 535.128 kb on + strand, within Echvi_0485at 535.129 kb on - strand, within Echvi_0485at 535.129 kb on - strand, within Echvi_0485at 535.129 kb on - strand, within Echvi_0485at 535.138 kb on - strand, within Echvi_0485at 535.155 kb on + strand, within Echvi_0485at 535.198 kb on + strand, within Echvi_0485at 535.298 kb on + strand, within Echvi_0485at 535.346 kb on + strand, within Echvi_0485at 535.346 kb on + strand, within Echvi_0485at 535.418 kb on - strand, within Echvi_0485at 535.418 kb on - strand, within Echvi_0485at 535.419 kb on + strand, within Echvi_0485at 535.419 kb on + strand, within Echvi_0485at 535.419 kb on + strand, within Echvi_0485at 535.419 kb on + strand, within Echvi_0485at 535.420 kb on - strand, within Echvi_0485at 535.431 kb on + strand, within Echvi_0485at 535.431 kb on + strand, within Echvi_0485at 535.431 kb on + strand, within Echvi_0485at 535.453 kb on + strand, within Echvi_0485at 535.453 kb on + strand, within Echvi_0485at 535.453 kb on + strand, within Echvi_0485at 535.453 kb on + strand, within Echvi_0485at 535.454 kb on - strand, within Echvi_0485at 535.457 kb on + strand, within Echvi_0485at 535.458 kb on - strand, within Echvi_0485at 535.517 kb on - strand, within Echvi_0485at 535.524 kb on + strand, within Echvi_0485at 535.524 kb on + strand, within Echvi_0485at 535.550 kb on + strand, within Echvi_0485at 535.633 kb on + strand, within Echvi_0485at 535.634 kb on - strand, within Echvi_0485at 535.636 kb on - strand, within Echvi_0485at 535.752 kb on + strand, within Echvi_0485at 535.793 kb on - strand, within Echvi_0485at 535.809 kb on - strand, within Echvi_0485at 535.968 kb on + strand, within Echvi_0485at 536.001 kb on - strand, within Echvi_0485at 536.051 kb on - strand, within Echvi_0485at 536.055 kb on + strand, within Echvi_0485at 536.056 kb on - strand, within Echvi_0485at 536.056 kb on - strand, within Echvi_0485at 536.256 kb on + strandat 536.275 kb on + strandat 536.275 kb on + strandat 536.275 kb on + strandat 536.387 kb on - strandat 536.389 kb on - strandat 536.403 kb on + strandat 536.403 kb on + strandat 536.425 kb on + strandat 536.440 kb on - strandat 536.440 kb on - strandat 536.508 kb on + strandat 536.526 kb on + strandat 536.526 kb on + strandat 536.559 kb on + strandat 536.628 kb on - strandat 536.636 kb on + strandat 536.636 kb on + strandat 536.688 kb on - strandat 536.771 kb on + strand, within Echvi_0486at 536.816 kb on - strand, within Echvi_0486at 536.826 kb on - strand, within Echvi_0486at 536.829 kb on + strand, within Echvi_0486at 536.948 kb on + strand, within Echvi_0486at 536.949 kb on - strand, within Echvi_0486at 537.024 kb on + strand, within Echvi_0486at 537.073 kb on - strand, within Echvi_0486at 537.073 kb on - strand, within Echvi_0486at 537.131 kb on + strand, within Echvi_0486at 537.135 kb on - strand, within Echvi_0486at 537.357 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.375 kb on - strand, within Echvi_0486at 537.375 kb on - strand, within Echvi_0486

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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532,313 + Echvi_0483 0.54 -0.3
532,314 - Echvi_0483 0.54 +0.2
532,350 + Echvi_0483 0.57 +0.5
532,352 + Echvi_0483 0.57 -0.3
532,352 + Echvi_0483 0.57 -1.8
532,353 - Echvi_0483 0.57 -2.3
532,353 - Echvi_0483 0.57 +1.4
532,469 - Echvi_0483 0.68 -0.3
532,483 + Echvi_0483 0.69 +0.7
532,529 + Echvi_0483 0.73 -2.1
532,534 + Echvi_0483 0.73 +0.8
532,676 + Echvi_0483 0.86 +0.3
532,677 - Echvi_0483 0.86 +1.0
532,677 - Echvi_0483 0.86 +0.4
532,677 - Echvi_0483 0.86 -1.0
532,677 - Echvi_0483 0.86 +0.1
532,679 + Echvi_0483 0.86 -0.0
532,680 - Echvi_0483 0.86 +1.8
532,680 - Echvi_0483 0.86 -0.4
532,680 - Echvi_0483 0.86 +0.4
532,719 + Echvi_0483 0.90 +2.2
532,806 + -1.7
532,812 + -0.2
532,812 + -0.3
532,814 + -0.5
532,847 + +0.8
532,897 + Echvi_0484 0.20 -0.8
532,915 - Echvi_0484 0.34 -0.2
532,998 - +0.4
533,022 + -0.3
533,063 + -0.6
533,064 - -0.2
533,064 - -0.3
533,067 - +0.4
533,135 + -0.6
533,139 + +1.3
533,140 - +1.4
533,202 + +0.2
533,209 + -0.6
533,210 - +0.0
533,249 - +0.2
533,256 + +2.5
533,292 + -0.3
533,292 + -1.9
533,293 - -0.4
533,299 - +0.6
533,356 + -0.8
533,357 - +0.2
533,416 + -0.4
533,417 - -0.9
533,425 + +1.0
533,426 - +0.0
533,426 - -1.6
533,504 + +0.6
533,504 + +0.5
533,505 - -0.3
533,534 - +1.0
533,559 - -0.2
533,595 + Echvi_0485 0.10 -0.5
533,595 + Echvi_0485 0.10 +0.4
533,596 - Echvi_0485 0.10 -0.2
533,631 + Echvi_0485 0.12 -0.2
533,631 + Echvi_0485 0.12 +2.8
533,632 - Echvi_0485 0.12 +1.3
533,691 + Echvi_0485 0.14 +2.0
533,692 - Echvi_0485 0.14 +0.7
533,692 - Echvi_0485 0.14 +0.2
533,692 - Echvi_0485 0.14 -0.3
533,694 + Echvi_0485 0.14 -0.2
533,789 + Echvi_0485 0.17 -1.0
533,820 + Echvi_0485 0.18 -0.9
533,859 + Echvi_0485 0.19 -1.4
533,877 - Echvi_0485 0.19 -1.3
533,965 + Echvi_0485 0.22 +1.0
533,965 + Echvi_0485 0.22 -0.6
533,965 + Echvi_0485 0.22 -0.5
533,966 - Echvi_0485 0.22 +0.2
533,966 - Echvi_0485 0.22 +0.8
534,027 - Echvi_0485 0.24 -0.6
534,050 + Echvi_0485 0.25 -0.2
534,051 - Echvi_0485 0.25 -1.0
534,058 - Echvi_0485 0.25 +0.2
534,058 - Echvi_0485 0.25 -1.9
534,180 + Echvi_0485 0.29 -0.4
534,318 + Echvi_0485 0.34 -0.8
534,405 + Echvi_0485 0.36 -0.3
534,473 + Echvi_0485 0.39 -0.4
534,622 + Echvi_0485 0.43 +0.0
534,664 + Echvi_0485 0.45 -2.0
534,665 - Echvi_0485 0.45 -0.6
534,730 + Echvi_0485 0.47 -0.8
534,731 - Echvi_0485 0.47 +0.6
534,731 - Echvi_0485 0.47 +0.9
534,751 - Echvi_0485 0.48 +0.5
534,763 + Echvi_0485 0.48 -0.2
534,764 - Echvi_0485 0.48 +1.0
534,814 + Echvi_0485 0.50 -1.1
534,817 + Echvi_0485 0.50 -1.9
534,823 - Echvi_0485 0.50 -0.9
534,823 - Echvi_0485 0.50 -0.1
534,921 + Echvi_0485 0.53 -1.9
534,970 + Echvi_0485 0.55 -1.2
534,970 + Echvi_0485 0.55 -0.4
535,044 + Echvi_0485 0.57 +0.3
535,108 + Echvi_0485 0.59 +0.1
535,128 + Echvi_0485 0.60 -0.4
535,128 + Echvi_0485 0.60 +0.6
535,129 - Echvi_0485 0.60 -0.8
535,129 - Echvi_0485 0.60 -0.4
535,129 - Echvi_0485 0.60 -1.3
535,138 - Echvi_0485 0.60 -0.8
535,155 + Echvi_0485 0.60 -0.1
535,198 + Echvi_0485 0.62 -1.6
535,298 + Echvi_0485 0.65 -0.4
535,346 + Echvi_0485 0.67 +0.4
535,346 + Echvi_0485 0.67 -3.4
535,418 - Echvi_0485 0.69 -0.0
535,418 - Echvi_0485 0.69 +1.0
535,419 + Echvi_0485 0.69 -0.5
535,419 + Echvi_0485 0.69 +0.1
535,419 + Echvi_0485 0.69 -1.3
535,419 + Echvi_0485 0.69 -0.9
535,420 - Echvi_0485 0.69 -1.1
535,431 + Echvi_0485 0.69 -0.9
535,431 + Echvi_0485 0.69 -0.6
535,431 + Echvi_0485 0.69 +0.1
535,453 + Echvi_0485 0.70 -0.0
535,453 + Echvi_0485 0.70 -2.6
535,453 + Echvi_0485 0.70 -0.6
535,453 + Echvi_0485 0.70 +0.4
535,454 - Echvi_0485 0.70 +0.2
535,457 + Echvi_0485 0.70 +0.3
535,458 - Echvi_0485 0.70 +0.0
535,517 - Echvi_0485 0.72 +1.0
535,524 + Echvi_0485 0.72 +0.1
535,524 + Echvi_0485 0.72 -0.8
535,550 + Echvi_0485 0.73 +2.0
535,633 + Echvi_0485 0.76 +1.7
535,634 - Echvi_0485 0.76 -0.2
535,636 - Echvi_0485 0.76 -0.4
535,752 + Echvi_0485 0.80 +0.9
535,793 - Echvi_0485 0.81 -0.9
535,809 - Echvi_0485 0.81 -0.8
535,968 + Echvi_0485 0.87 +0.0
536,001 - Echvi_0485 0.88 -2.6
536,051 - Echvi_0485 0.89 -0.8
536,055 + Echvi_0485 0.89 -0.6
536,056 - Echvi_0485 0.89 -0.6
536,056 - Echvi_0485 0.89 +0.7
536,256 + -3.5
536,275 + -1.0
536,275 + +0.3
536,275 + -0.1
536,387 - +0.9
536,389 - -2.4
536,403 + +0.0
536,403 + -3.0
536,425 + -1.4
536,440 - -2.4
536,440 - -2.5
536,508 + +0.5
536,526 + -1.1
536,526 + -0.7
536,559 + +0.0
536,628 - +2.0
536,636 + +2.2
536,636 + +0.7
536,688 - -2.7
536,771 + Echvi_0486 0.14 +0.0
536,816 - Echvi_0486 0.16 -0.1
536,826 - Echvi_0486 0.16 +1.2
536,829 + Echvi_0486 0.16 +0.5
536,948 + Echvi_0486 0.22 +0.1
536,949 - Echvi_0486 0.22 +0.3
537,024 + Echvi_0486 0.25 -0.8
537,073 - Echvi_0486 0.28 -1.1
537,073 - Echvi_0486 0.28 -0.3
537,131 + Echvi_0486 0.30 -0.1
537,135 - Echvi_0486 0.31 +0.9
537,357 + Echvi_0486 0.41 -1.7
537,374 + Echvi_0486 0.42 -0.4
537,374 + Echvi_0486 0.42 -1.2
537,374 + Echvi_0486 0.42 -0.2
537,374 + Echvi_0486 0.42 -1.9
537,374 + Echvi_0486 0.42 +0.0
537,375 - Echvi_0486 0.42 -0.9
537,375 - Echvi_0486 0.42 -0.9

Or see this region's nucleotide sequence