Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0436 and Echvi_0437 are separated by 101 nucleotides Echvi_0437 and Echvi_0438 are separated by 33 nucleotides Echvi_0438 and Echvi_0439 overlap by 61 nucleotides Echvi_0439 and Echvi_0440 are separated by 212 nucleotides
Echvi_0436: Echvi_0436 - Bacterial mobilisation protein (MobC)., at 476,747 to 477,091
_0436
Echvi_0437: Echvi_0437 - DNA primase (bacterial type), at 477,193 to 478,056
_0437
Echvi_0438: Echvi_0438 - hypothetical protein, at 478,090 to 478,263
_0438
Echvi_0439: Echvi_0439 - hypothetical protein, at 478,203 to 478,484
_0439
Echvi_0440: Echvi_0440 - DNA repair proteins, at 478,697 to 479,167
_0440
Position (kb) 478
479 Strain fitness (log2 ratio) -2
-1
0
1
2 at 477.181 kb on + strand at 477.183 kb on + strand at 477.195 kb on - strand at 477.246 kb on + strand at 477.248 kb on + strand at 477.294 kb on + strand, within Echvi_0437 at 477.327 kb on + strand, within Echvi_0437 at 477.327 kb on + strand, within Echvi_0437 at 477.350 kb on - strand, within Echvi_0437 at 477.365 kb on - strand, within Echvi_0437 at 477.368 kb on - strand, within Echvi_0437 at 477.452 kb on + strand, within Echvi_0437 at 477.452 kb on + strand, within Echvi_0437 at 477.459 kb on + strand, within Echvi_0437 at 477.459 kb on + strand, within Echvi_0437 at 477.459 kb on + strand, within Echvi_0437 at 477.460 kb on - strand, within Echvi_0437 at 477.486 kb on + strand, within Echvi_0437 at 477.486 kb on + strand, within Echvi_0437 at 477.486 kb on + strand, within Echvi_0437 at 477.487 kb on - strand, within Echvi_0437 at 477.493 kb on + strand, within Echvi_0437 at 477.515 kb on + strand, within Echvi_0437 at 477.515 kb on + strand, within Echvi_0437 at 477.516 kb on - strand, within Echvi_0437 at 477.548 kb on + strand, within Echvi_0437 at 477.549 kb on + strand, within Echvi_0437 at 477.620 kb on + strand, within Echvi_0437 at 477.623 kb on + strand, within Echvi_0437 at 477.623 kb on + strand, within Echvi_0437 at 477.623 kb on + strand, within Echvi_0437 at 477.624 kb on - strand, within Echvi_0437 at 477.681 kb on - strand, within Echvi_0437 at 477.727 kb on - strand, within Echvi_0437 at 477.727 kb on - strand, within Echvi_0437 at 477.806 kb on + strand, within Echvi_0437 at 477.806 kb on + strand, within Echvi_0437 at 477.876 kb on - strand, within Echvi_0437 at 477.901 kb on + strand, within Echvi_0437 at 477.901 kb on + strand, within Echvi_0437 at 478.059 kb on + strand at 478.060 kb on - strand at 478.095 kb on + strand at 478.096 kb on - strand at 478.099 kb on - strand at 478.132 kb on - strand, within Echvi_0438 at 478.163 kb on + strand, within Echvi_0438 at 478.164 kb on - strand, within Echvi_0438 at 478.172 kb on + strand, within Echvi_0438 at 478.172 kb on + strand, within Echvi_0438 at 478.523 kb on + strand at 478.523 kb on + strand at 478.573 kb on + strand at 478.648 kb on + strand at 478.648 kb on + strand at 478.720 kb on - strand at 478.751 kb on - strand, within Echvi_0440 at 478.784 kb on + strand, within Echvi_0440 at 478.784 kb on + strand, within Echvi_0440
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 477,181 + -0.4 477,183 + +0.1 477,195 - +0.7 477,246 + -0.4 477,248 + +0.0 477,294 + Echvi_0437 0.12 -1.1 477,327 + Echvi_0437 0.16 -0.9 477,327 + Echvi_0437 0.16 -1.7 477,350 - Echvi_0437 0.18 -1.7 477,365 - Echvi_0437 0.20 +1.8 477,368 - Echvi_0437 0.20 +0.7 477,452 + Echvi_0437 0.30 +0.9 477,452 + Echvi_0437 0.30 +1.0 477,459 + Echvi_0437 0.31 +1.5 477,459 + Echvi_0437 0.31 -0.7 477,459 + Echvi_0437 0.31 +0.2 477,460 - Echvi_0437 0.31 +1.0 477,486 + Echvi_0437 0.34 +0.7 477,486 + Echvi_0437 0.34 +0.1 477,486 + Echvi_0437 0.34 +0.5 477,487 - Echvi_0437 0.34 -0.5 477,493 + Echvi_0437 0.35 +0.2 477,515 + Echvi_0437 0.37 -0.2 477,515 + Echvi_0437 0.37 +0.2 477,516 - Echvi_0437 0.37 +0.1 477,548 + Echvi_0437 0.41 -1.3 477,549 + Echvi_0437 0.41 -0.8 477,620 + Echvi_0437 0.49 +0.0 477,623 + Echvi_0437 0.50 +1.4 477,623 + Echvi_0437 0.50 -0.3 477,623 + Echvi_0437 0.50 -0.3 477,624 - Echvi_0437 0.50 -1.3 477,681 - Echvi_0437 0.56 -0.5 477,727 - Echvi_0437 0.62 +0.0 477,727 - Echvi_0437 0.62 -0.4 477,806 + Echvi_0437 0.71 +1.4 477,806 + Echvi_0437 0.71 +0.9 477,876 - Echvi_0437 0.79 -1.5 477,901 + Echvi_0437 0.82 -2.4 477,901 + Echvi_0437 0.82 -0.8 478,059 + -0.0 478,060 - -0.4 478,095 + +1.2 478,096 - +1.0 478,099 - +0.6 478,132 - Echvi_0438 0.24 -0.1 478,163 + Echvi_0438 0.42 -1.5 478,164 - Echvi_0438 0.43 -1.0 478,172 + Echvi_0438 0.47 -1.8 478,172 + Echvi_0438 0.47 -0.8 478,523 + -2.1 478,523 + -1.1 478,573 + -0.1 478,648 + +0.2 478,648 + -0.4 478,720 - -1.5 478,751 - Echvi_0440 0.11 +0.8 478,784 + Echvi_0440 0.18 -0.1 478,784 + Echvi_0440 0.18 -0.5
Or see this region's nucleotide sequence