Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0359

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0357 and Echvi_0358 are separated by 387 nucleotidesEchvi_0358 and Echvi_0359 overlap by 8 nucleotidesEchvi_0359 and Echvi_0360 are separated by 24 nucleotides Echvi_0357: Echvi_0357 - hypothetical protein, at 385,126 to 385,608 _0357 Echvi_0358: Echvi_0358 - RNA polymerase sigma factor, sigma-70 family, at 385,996 to 386,565 _0358 Echvi_0359: Echvi_0359 - hypothetical protein, at 386,558 to 387,343 _0359 Echvi_0360: Echvi_0360 - hypothetical protein, at 387,368 to 388,405 _0360 Position (kb) 386 387 388Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 385.592 kb on - strandat 385.603 kb on + strandat 385.614 kb on + strandat 385.627 kb on - strandat 385.657 kb on + strandat 385.660 kb on + strandat 385.660 kb on + strandat 385.660 kb on + strandat 385.661 kb on - strandat 385.661 kb on - strandat 385.688 kb on - strandat 385.691 kb on - strandat 385.724 kb on + strandat 385.768 kb on - strandat 385.831 kb on + strandat 385.832 kb on - strandat 385.900 kb on + strandat 385.900 kb on + strandat 385.900 kb on + strandat 385.901 kb on - strandat 385.901 kb on - strandat 385.904 kb on + strandat 385.904 kb on + strandat 385.904 kb on + strandat 385.905 kb on - strandat 385.909 kb on + strandat 385.910 kb on - strandat 386.036 kb on + strandat 386.036 kb on + strandat 386.037 kb on - strandat 386.080 kb on + strand, within Echvi_0358at 386.081 kb on - strand, within Echvi_0358at 386.081 kb on - strand, within Echvi_0358at 386.111 kb on + strand, within Echvi_0358at 386.111 kb on + strand, within Echvi_0358at 386.111 kb on + strand, within Echvi_0358at 386.123 kb on - strand, within Echvi_0358at 386.123 kb on - strand, within Echvi_0358at 386.125 kb on - strand, within Echvi_0358at 386.197 kb on + strand, within Echvi_0358at 386.294 kb on + strand, within Echvi_0358at 386.333 kb on - strand, within Echvi_0358at 386.417 kb on - strand, within Echvi_0358at 386.417 kb on - strand, within Echvi_0358at 386.417 kb on - strand, within Echvi_0358at 386.432 kb on - strand, within Echvi_0358at 386.513 kb on + strandat 386.514 kb on - strandat 386.514 kb on - strandat 386.535 kb on - strandat 386.535 kb on - strandat 386.691 kb on + strand, within Echvi_0359at 386.691 kb on + strand, within Echvi_0359at 386.734 kb on + strand, within Echvi_0359at 387.264 kb on + strand, within Echvi_0359at 387.608 kb on - strand, within Echvi_0360at 388.193 kb on + strand, within Echvi_0360

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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385,592 - +0.6
385,603 + +0.8
385,614 + -0.8
385,627 - -0.8
385,657 + -0.0
385,660 + -2.0
385,660 + -3.0
385,660 + -0.7
385,661 - -0.3
385,661 - +0.2
385,688 - +0.8
385,691 - -0.7
385,724 + +0.0
385,768 - -0.3
385,831 + -2.3
385,832 - -1.0
385,900 + -0.6
385,900 + -0.2
385,900 + -0.9
385,901 - -1.1
385,901 - -0.3
385,904 + -0.3
385,904 + +0.8
385,904 + +1.9
385,905 - -0.3
385,909 + +1.6
385,910 - -0.3
386,036 + +0.9
386,036 + +0.8
386,037 - -0.4
386,080 + Echvi_0358 0.15 +0.6
386,081 - Echvi_0358 0.15 -0.1
386,081 - Echvi_0358 0.15 +0.5
386,111 + Echvi_0358 0.20 +1.7
386,111 + Echvi_0358 0.20 +1.5
386,111 + Echvi_0358 0.20 -1.0
386,123 - Echvi_0358 0.22 -0.6
386,123 - Echvi_0358 0.22 -0.5
386,125 - Echvi_0358 0.23 +0.1
386,197 + Echvi_0358 0.35 -0.3
386,294 + Echvi_0358 0.52 -0.4
386,333 - Echvi_0358 0.59 -1.5
386,417 - Echvi_0358 0.74 -1.0
386,417 - Echvi_0358 0.74 -0.3
386,417 - Echvi_0358 0.74 -0.7
386,432 - Echvi_0358 0.76 -0.2
386,513 + -0.4
386,514 - -1.5
386,514 - -0.6
386,535 - -0.4
386,535 - +1.2
386,691 + Echvi_0359 0.17 -0.5
386,691 + Echvi_0359 0.17 -2.6
386,734 + Echvi_0359 0.22 +0.2
387,264 + Echvi_0359 0.90 -1.7
387,608 - Echvi_0360 0.23 +0.8
388,193 + Echvi_0360 0.79 +0.4

Or see this region's nucleotide sequence